miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 183334 0.67 0.640578
Target:  5'- cGUCGCccaGGUUCaGCACGuacagcgcgccggacCCCAGGUCCc -3'
miRNA:   3'- -CAGCG---CCAGGgCGUGCu--------------GGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 67044 0.67 0.639626
Target:  5'- cGUCGCGGaCCCG-GCGuCCgUGGGCUCc -3'
miRNA:   3'- -CAGCGCCaGGGCgUGCuGG-GUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 23338 0.67 0.639626
Target:  5'- -gUGcCGGUCCCGuCGCGACacucgaacacgCGGGCCg -3'
miRNA:   3'- caGC-GCCAGGGC-GUGCUGg----------GUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 745 0.67 0.639626
Target:  5'- uUCGCGGggcUCUGC-CGuuuugCCGGGCCCg -3'
miRNA:   3'- cAGCGCCa--GGGCGuGCug---GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 115597 0.67 0.639626
Target:  5'- -cUGCGGUcgaCCCGCuCG-CCCGGcGCCg -3'
miRNA:   3'- caGCGCCA---GGGCGuGCuGGGUC-CGGg -5'
10848 5' -63.2 NC_002794.1 + 16311 0.67 0.639626
Target:  5'- -cCGCGG-CCgGCugGAucCCCcuGCCCc -3'
miRNA:   3'- caGCGCCaGGgCGugCU--GGGucCGGG- -5'
10848 5' -63.2 NC_002794.1 + 32566 0.67 0.639626
Target:  5'- -cCGCGGauagUCgCGCGCGGCggugCCGGGgCCg -3'
miRNA:   3'- caGCGCC----AGgGCGUGCUG----GGUCCgGG- -5'
10848 5' -63.2 NC_002794.1 + 130638 0.67 0.631056
Target:  5'- cGUCGcCGG-CCCGCccgccgccccgccgcCGGCCgCGGGCuCCg -3'
miRNA:   3'- -CAGC-GCCaGGGCGu--------------GCUGG-GUCCG-GG- -5'
10848 5' -63.2 NC_002794.1 + 113663 0.67 0.630104
Target:  5'- cUCG-GcGUCCaGCGCGGCgagCAGGCCCg -3'
miRNA:   3'- cAGCgC-CAGGgCGUGCUGg--GUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 63147 0.67 0.629152
Target:  5'- -cCGCGuGcacUCCCagcugcuGCACGGCCgAGGCCg -3'
miRNA:   3'- caGCGC-C---AGGG-------CGUGCUGGgUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 66250 0.67 0.624391
Target:  5'- cUUGCGGcgaCCCGUcCGGCCCcguagacgagcggagGGGUCCg -3'
miRNA:   3'- cAGCGCCa--GGGCGuGCUGGG---------------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 13119 0.67 0.620584
Target:  5'- -gCGgGGUCgCCGCGCGGCUCgcucgcgcGGGUCg -3'
miRNA:   3'- caGCgCCAG-GGCGUGCUGGG--------UCCGGg -5'
10848 5' -63.2 NC_002794.1 + 185949 0.67 0.620584
Target:  5'- cUCGCGGccgcgCCCGUuucccugucCGuuCCCGGGUCCg -3'
miRNA:   3'- cAGCGCCa----GGGCGu--------GCu-GGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 31321 0.67 0.620584
Target:  5'- -gCGUGaGUCUCGU-CGGCUCGGcGCCCg -3'
miRNA:   3'- caGCGC-CAGGGCGuGCUGGGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 181613 0.67 0.620584
Target:  5'- cGUUGCcGcaUCUCGCACGuguagggcggaGCCCGGGCuCCg -3'
miRNA:   3'- -CAGCGcC--AGGGCGUGC-----------UGGGUCCG-GG- -5'
10848 5' -63.2 NC_002794.1 + 115833 0.67 0.61107
Target:  5'- aUCgGCGGggCCCgGCG-GGCUCGGGCCUg -3'
miRNA:   3'- cAG-CGCCa-GGG-CGUgCUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 87301 0.67 0.61107
Target:  5'- --aGCGGgccuaCCCGguaGCGGucCCCAGGUCCa -3'
miRNA:   3'- cagCGCCa----GGGCg--UGCU--GGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 180914 0.67 0.61107
Target:  5'- -cCGCGGUCUCGC-CGGCgCCgucggAGGUCg -3'
miRNA:   3'- caGCGCCAGGGCGuGCUG-GG-----UCCGGg -5'
10848 5' -63.2 NC_002794.1 + 34944 0.67 0.61107
Target:  5'- uGUCccCGG-CCCGcCGCGACCCGcGCCUc -3'
miRNA:   3'- -CAGc-GCCaGGGC-GUGCUGGGUcCGGG- -5'
10848 5' -63.2 NC_002794.1 + 51283 0.67 0.61107
Target:  5'- -gCGCGG-CCCGCcCGAacgggCAGGCUCg -3'
miRNA:   3'- caGCGCCaGGGCGuGCUgg---GUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.