miRNA display CGI


Results 61 - 80 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 22672 0.67 0.601571
Target:  5'- -gCGCGGUCgCUuCGCuuCCCGGGUCCc -3'
miRNA:   3'- caGCGCCAG-GGcGUGcuGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 43847 0.67 0.601571
Target:  5'- cUCaCaGUCCCGCuCGGCCCGGGgCa -3'
miRNA:   3'- cAGcGcCAGGGCGuGCUGGGUCCgGg -5'
10848 5' -63.2 NC_002794.1 + 37988 0.67 0.601571
Target:  5'- aUCGCGGUCagCCGggcCACG-CCgUAGGCCUg -3'
miRNA:   3'- cAGCGCCAG--GGC---GUGCuGG-GUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 82796 0.67 0.601571
Target:  5'- -cCGC-GUCCaCGCgcgccGCGACCCGcGGCUCg -3'
miRNA:   3'- caGCGcCAGG-GCG-----UGCUGGGU-CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 80901 0.67 0.601571
Target:  5'- --gGCGGcCCuCG-ACGACCCGcGCCCg -3'
miRNA:   3'- cagCGCCaGG-GCgUGCUGGGUcCGGG- -5'
10848 5' -63.2 NC_002794.1 + 182754 0.67 0.592092
Target:  5'- -aCGCGGUacagguagcagCCGCACG-CCC-GGUCCa -3'
miRNA:   3'- caGCGCCAg----------GGCGUGCuGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 38633 0.67 0.592092
Target:  5'- cUCGcCGGUgCgGCGCGACggAGGCUCg -3'
miRNA:   3'- cAGC-GCCAgGgCGUGCUGggUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 72549 0.67 0.592092
Target:  5'- -gCGUGGUCgCGCaacGCGGCCgGGaagaGCCCg -3'
miRNA:   3'- caGCGCCAGgGCG---UGCUGGgUC----CGGG- -5'
10848 5' -63.2 NC_002794.1 + 23619 0.67 0.592092
Target:  5'- -cCGCGGgcgCCCggacGCGCGGCCCucGaCCCc -3'
miRNA:   3'- caGCGCCa--GGG----CGUGCUGGGucC-GGG- -5'
10848 5' -63.2 NC_002794.1 + 128437 0.68 0.586416
Target:  5'- --gGUGG-CCCGCGCGcacggcgccuccggaGCCCAGGacgaCCg -3'
miRNA:   3'- cagCGCCaGGGCGUGC---------------UGGGUCCg---GG- -5'
10848 5' -63.2 NC_002794.1 + 43781 0.68 0.582637
Target:  5'- cUCGCcgaacGcCCCGCGucCGACCCgccgcuccGGGCCCa -3'
miRNA:   3'- cAGCGc----CaGGGCGU--GCUGGG--------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 176607 0.68 0.579807
Target:  5'- --aGCGG-CCgGCACGGCCauccucguggcguucGGCCCg -3'
miRNA:   3'- cagCGCCaGGgCGUGCUGGgu-------------CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 188634 0.68 0.573214
Target:  5'- cUCGCGGaCCCGggucuugaGCaGCCC-GGCCCg -3'
miRNA:   3'- cAGCGCCaGGGCg-------UGcUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 66670 0.68 0.573214
Target:  5'- cGUCGUGGUCa---ACGGcCCCGGcGCCCc -3'
miRNA:   3'- -CAGCGCCAGggcgUGCU-GGGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 834 0.68 0.573214
Target:  5'- cUC-CGGUCCCcgGCGCGugCguucGGCCCa -3'
miRNA:   3'- cAGcGCCAGGG--CGUGCugGgu--CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 94283 0.68 0.573214
Target:  5'- -gCGCGG-CCCGagcgggggGCGGCUCGGGCgCg -3'
miRNA:   3'- caGCGCCaGGGCg-------UGCUGGGUCCGgG- -5'
10848 5' -63.2 NC_002794.1 + 123666 0.68 0.573214
Target:  5'- --aGCuGGUgUCGCuCGGCCCGGGCUg -3'
miRNA:   3'- cagCG-CCAgGGCGuGCUGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 38505 0.68 0.572273
Target:  5'- -gCGcCGGUCgCCGCcgccuccGCGAuCCCAGGUCg -3'
miRNA:   3'- caGC-GCCAG-GGCG-------UGCU-GGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 178022 0.68 0.563826
Target:  5'- cGUCGgGGUCaCCGCccCGAUCC-GGCUg -3'
miRNA:   3'- -CAGCgCCAG-GGCGu-GCUGGGuCCGGg -5'
10848 5' -63.2 NC_002794.1 + 104395 0.68 0.563826
Target:  5'- cGUCagGUGGUCguCCGcCGCGGCCUcGGCCUc -3'
miRNA:   3'- -CAG--CGCCAG--GGC-GUGCUGGGuCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.