miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 287 0.69 0.508534
Target:  5'- --gGCGGcCCUgGCGCGccgaACgCCGGGCCCg -3'
miRNA:   3'- cagCGCCaGGG-CGUGC----UG-GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 745 0.67 0.639626
Target:  5'- uUCGCGGggcUCUGC-CGuuuugCCGGGCCCg -3'
miRNA:   3'- cAGCGCCa--GGGCGuGCug---GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 834 0.68 0.573214
Target:  5'- cUC-CGGUCCCcgGCGCGugCguucGGCCCa -3'
miRNA:   3'- cAGcGCCAGGG--CGUGCugGgu--CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 4826 0.73 0.310587
Target:  5'- cGUCGaaCGGUuguuggccaCCUGCGCGGCCCAcGuGCCCg -3'
miRNA:   3'- -CAGC--GCCA---------GGGCGUGCUGGGU-C-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 6370 0.7 0.464271
Target:  5'- uGUCGCGGUCCC---UGGCCCuGcGCCg -3'
miRNA:   3'- -CAGCGCCAGGGcguGCUGGGuC-CGGg -5'
10848 5' -63.2 NC_002794.1 + 8677 0.66 0.652946
Target:  5'- uGUCGaucuCGGcCCCGUggACGAuggagcacacccugcCCCGGGUCCa -3'
miRNA:   3'- -CAGC----GCCaGGGCG--UGCU---------------GGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 11027 0.69 0.517604
Target:  5'- cGUCaCGGcucaccucuUCCCGUGUGACCUGGGCCUg -3'
miRNA:   3'- -CAGcGCC---------AGGGCGUGCUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 12718 0.71 0.374672
Target:  5'- -cUGCGcGUUCCGCgGCGACgaGGGCCCg -3'
miRNA:   3'- caGCGC-CAGGGCG-UGCUGggUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 13119 0.67 0.620584
Target:  5'- -gCGgGGUCgCCGCGCGGCUCgcucgcgcGGGUCg -3'
miRNA:   3'- caGCgCCAG-GGCGUGCUGGG--------UCCGGg -5'
10848 5' -63.2 NC_002794.1 + 13349 0.69 0.490601
Target:  5'- gGUgGCGGcgCCC-CuCG-CCCGGGCCCu -3'
miRNA:   3'- -CAgCGCCa-GGGcGuGCuGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 14735 0.71 0.382323
Target:  5'- cUCGgGGUCCgGCGCGucaUCGGaGCCCg -3'
miRNA:   3'- cAGCgCCAGGgCGUGCug-GGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 14925 0.71 0.405892
Target:  5'- cUCGCGGUCCCG-ACGugCUcucgaucGGCUCg -3'
miRNA:   3'- cAGCGCCAGGGCgUGCugGGu------CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 16311 0.67 0.639626
Target:  5'- -cCGCGG-CCgGCugGAucCCCcuGCCCc -3'
miRNA:   3'- caGCGCCaGGgCGugCU--GGGucCGGG- -5'
10848 5' -63.2 NC_002794.1 + 17425 0.81 0.090016
Target:  5'- aUCGCGGUCuCCGCGCcgccggcGCUCGGGCCCg -3'
miRNA:   3'- cAGCGCCAG-GGCGUGc------UGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 17949 0.69 0.517604
Target:  5'- --gGCGGccaCCCGCGacucGCCCGGGCCg -3'
miRNA:   3'- cagCGCCa--GGGCGUgc--UGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 18795 0.69 0.514876
Target:  5'- cUCGaCGGcCCCGCcggccaacgggucgGCGACCUcGGCCg -3'
miRNA:   3'- cAGC-GCCaGGGCG--------------UGCUGGGuCCGGg -5'
10848 5' -63.2 NC_002794.1 + 19265 0.66 0.658648
Target:  5'- -cCGCGGcCCCcgugGCGCGuCuCCuGGCCUg -3'
miRNA:   3'- caGCGCCaGGG----CGUGCuG-GGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 19424 0.66 0.687025
Target:  5'- -gCGCGcccUCCUcCGCGA-CCAGGCCCc -3'
miRNA:   3'- caGCGCc--AGGGcGUGCUgGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 19512 0.65 0.702026
Target:  5'- gGUCGCGccgcucggagcgCCgGCGCGGCgC-GGCCCg -3'
miRNA:   3'- -CAGCGCca----------GGgCGUGCUGgGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 22672 0.67 0.601571
Target:  5'- -gCGCGGUCgCUuCGCuuCCCGGGUCCc -3'
miRNA:   3'- caGCGCCAG-GGcGUGcuGGGUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.