miRNA display CGI


Results 21 - 40 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 23338 0.67 0.639626
Target:  5'- -gUGcCGGUCCCGuCGCGACacucgaacacgCGGGCCg -3'
miRNA:   3'- caGC-GCCAGGGC-GUGCUGg----------GUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 23619 0.67 0.592092
Target:  5'- -cCGCGGgcgCCCggacGCGCGGCCCucGaCCCc -3'
miRNA:   3'- caGCGCCa--GGG----CGUGCUGGGucC-GGG- -5'
10848 5' -63.2 NC_002794.1 + 30040 0.66 0.649142
Target:  5'- -gCGCGuGaacgaCCGa--GACCCGGGCCCg -3'
miRNA:   3'- caGCGC-Cag---GGCgugCUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 31321 0.67 0.620584
Target:  5'- -gCGUGaGUCUCGU-CGGCUCGGcGCCCg -3'
miRNA:   3'- caGCGC-CAGGGCGuGCUGGGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 31390 0.69 0.499532
Target:  5'- cGUCgGCGGcCCCGC-CGcGCCCGccGcGCCCg -3'
miRNA:   3'- -CAG-CGCCaGGGCGuGC-UGGGU--C-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 32166 0.7 0.438697
Target:  5'- --aGCGGUggCCCGCcUGGCCCcGGUCCc -3'
miRNA:   3'- cagCGCCA--GGGCGuGCUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 32566 0.67 0.639626
Target:  5'- -cCGCGGauagUCgCGCGCGGCggugCCGGGgCCg -3'
miRNA:   3'- caGCGCC----AGgGCGUGCUG----GGUCCgGG- -5'
10848 5' -63.2 NC_002794.1 + 33499 0.66 0.687025
Target:  5'- -aUGCaGaagCUGCugGACCCGGGCCa -3'
miRNA:   3'- caGCGcCag-GGCGugCUGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 34053 0.65 0.70296
Target:  5'- --gGcCGGcCCgCGCACGACCCGccguucccgccggcGGCCg -3'
miRNA:   3'- cagC-GCCaGG-GCGUGCUGGGU--------------CCGGg -5'
10848 5' -63.2 NC_002794.1 + 34944 0.67 0.61107
Target:  5'- uGUCccCGG-CCCGcCGCGACCCGcGCCUc -3'
miRNA:   3'- -CAGc-GCCaGGGC-GUGCUGGGUcCGGG- -5'
10848 5' -63.2 NC_002794.1 + 35779 0.66 0.667187
Target:  5'- cGUCGcCGGcgucgucUCCgGCGUGACCCuGcGCCCc -3'
miRNA:   3'- -CAGC-GCC-------AGGgCGUGCUGGGuC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 36003 0.68 0.54518
Target:  5'- uGUCGCGGggCUCGgGCGGCggaauccgCCGuccGGCCCg -3'
miRNA:   3'- -CAGCGCCa-GGGCgUGCUG--------GGU---CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 36229 0.66 0.696414
Target:  5'- -cCGCaGG-CCCGguCGAUaUAGGCCCc -3'
miRNA:   3'- caGCG-CCaGGGCguGCUGgGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 37003 0.75 0.23329
Target:  5'- --gGCGGaCCCGguagaGCGGCUCGGGCCCg -3'
miRNA:   3'- cagCGCCaGGGCg----UGCUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 37330 0.68 0.563826
Target:  5'- --aGCGGUggggCCCGgGCGGCagcaggUCGGGCCCc -3'
miRNA:   3'- cagCGCCA----GGGCgUGCUG------GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 37988 0.67 0.601571
Target:  5'- aUCGCGGUCagCCGggcCACG-CCgUAGGCCUg -3'
miRNA:   3'- cAGCGCCAG--GGC---GUGCuGG-GUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 38505 0.68 0.572273
Target:  5'- -gCGcCGGUCgCCGCcgccuccGCGAuCCCAGGUCg -3'
miRNA:   3'- caGC-GCCAG-GGCG-------UGCU-GGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 38633 0.67 0.592092
Target:  5'- cUCGcCGGUgCgGCGCGACggAGGCUCg -3'
miRNA:   3'- cAGC-GCCAgGgCGUGCUGggUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 41245 0.66 0.668134
Target:  5'- -cCGCGG--CCGC-CGACgCCGgcGGCCCg -3'
miRNA:   3'- caGCGCCagGGCGuGCUG-GGU--CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 42468 0.66 0.658648
Target:  5'- cGUCGUccauGUCgCGCGCG-CCgGGGCCg -3'
miRNA:   3'- -CAGCGc---CAGgGCGUGCuGGgUCCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.