miRNA display CGI


Results 41 - 60 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 43781 0.68 0.582637
Target:  5'- cUCGCcgaacGcCCCGCGucCGACCCgccgcuccGGGCCCa -3'
miRNA:   3'- cAGCGc----CaGGGCGU--GCUGGG--------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 43847 0.67 0.601571
Target:  5'- cUCaCaGUCCCGCuCGGCCCGGGgCa -3'
miRNA:   3'- cAGcGcCAGGGCGuGCUGGGUCCgGg -5'
10848 5' -63.2 NC_002794.1 + 45442 0.71 0.405892
Target:  5'- cUCGCGGaCCCGguCGcgcgucagcggGCCCAGGguCCCg -3'
miRNA:   3'- cAGCGCCaGGGCguGC-----------UGGGUCC--GGG- -5'
10848 5' -63.2 NC_002794.1 + 47904 1.04 0.002267
Target:  5'- -gCGCGGUCCCGCACGACCCAGGCCCc -3'
miRNA:   3'- caGCGCCAGGGCGUGCUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 48638 0.78 0.142944
Target:  5'- cGUCGgGG-CCCGCGagccgccgcaGACUCAGGCCCg -3'
miRNA:   3'- -CAGCgCCaGGGCGUg---------CUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 49244 0.69 0.503124
Target:  5'- cGUCGaCGGgcgCCCGCGC-ACCCacgacgggcgcuccaAcGGCCCg -3'
miRNA:   3'- -CAGC-GCCa--GGGCGUGcUGGG---------------U-CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 51283 0.67 0.61107
Target:  5'- -gCGCGG-CCCGCcCGAacgggCAGGCUCg -3'
miRNA:   3'- caGCGCCaGGGCGuGCUgg---GUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 52753 0.7 0.438697
Target:  5'- uUCGUaGUaCCgCGcCGCGGCCCGGGCCg -3'
miRNA:   3'- cAGCGcCA-GG-GC-GUGCUGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 54253 0.68 0.563826
Target:  5'- -gCGCGGUCCacgGCGCcGCgUCGGGCCa -3'
miRNA:   3'- caGCGCCAGGg--CGUGcUG-GGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 54924 0.66 0.687025
Target:  5'- -aCGCGcagcGUCCgcaGCGCGACCguGGUCa -3'
miRNA:   3'- caGCGC----CAGGg--CGUGCUGGguCCGGg -5'
10848 5' -63.2 NC_002794.1 + 55506 0.68 0.535932
Target:  5'- -aUGaCGGUCCUGCGCcacgccaGCCCGgcGGCCCc -3'
miRNA:   3'- caGC-GCCAGGGCGUGc------UGGGU--CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 56169 0.66 0.696414
Target:  5'- --aGCGGcCCCgguGCACGuagaGCaCCGGGCCg -3'
miRNA:   3'- cagCGCCaGGG---CGUGC----UG-GGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 56310 0.75 0.228068
Target:  5'- gGUCGCGGUCgCUG-GCGGCCguGGCCg -3'
miRNA:   3'- -CAGCGCCAG-GGCgUGCUGGguCCGGg -5'
10848 5' -63.2 NC_002794.1 + 58057 0.73 0.29053
Target:  5'- cGUCgGCGGcCCCgGCggcggcgggacggGCGGCCCGGcGCCCg -3'
miRNA:   3'- -CAG-CGCCaGGG-CG-------------UGCUGGGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 62702 0.66 0.652946
Target:  5'- uGUCgGCGGcCgCCGaCGCGACCCAGcgagacgcacuucccGCCg -3'
miRNA:   3'- -CAG-CGCCaG-GGC-GUGCUGGGUC---------------CGGg -5'
10848 5' -63.2 NC_002794.1 + 63147 0.67 0.629152
Target:  5'- -cCGCGuGcacUCCCagcugcuGCACGGCCgAGGCCg -3'
miRNA:   3'- caGCGC-C---AGGG-------CGUGCUGGgUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 65238 0.7 0.430353
Target:  5'- --gGCGGUCgCCGCggcgGCGAUCC-GGCCUc -3'
miRNA:   3'- cagCGCCAG-GGCG----UGCUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 66250 0.67 0.624391
Target:  5'- cUUGCGGcgaCCCGUcCGGCCCcguagacgagcggagGGGUCCg -3'
miRNA:   3'- cAGCGCCa--GGGCGuGCUGGG---------------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 66670 0.68 0.573214
Target:  5'- cGUCGUGGUCa---ACGGcCCCGGcGCCCc -3'
miRNA:   3'- -CAGCGCCAGggcgUGCU-GGGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 66807 0.72 0.352348
Target:  5'- aGUCGCccggcaucgucaGGgcgCCCgGCGCGACuCCGGGCgCCg -3'
miRNA:   3'- -CAGCG------------CCa--GGG-CGUGCUG-GGUCCG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.