miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 194513 0.71 0.370131
Target:  5'- -cCGCGG-CCCGCGugccgcCGGCCCAGcagcgccgccagcacGCCCg -3'
miRNA:   3'- caGCGCCaGGGCGU------GCUGGGUC---------------CGGG- -5'
10848 5' -63.2 NC_002794.1 + 194015 0.66 0.677596
Target:  5'- uUCGCGGcCgCCGCcgcCGGCgCCucGCCCg -3'
miRNA:   3'- cAGCGCCaG-GGCGu--GCUG-GGucCGGG- -5'
10848 5' -63.2 NC_002794.1 + 193832 0.66 0.662445
Target:  5'- cGUCGCGGcgCCgGCACuuauuauaguGugCCcacccaccccuccccGGGCCCc -3'
miRNA:   3'- -CAGCGCCa-GGgCGUG----------CugGG---------------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 193775 0.66 0.677596
Target:  5'- cUCGCucgCCCGCucgaucgcccgACGACgCCGGcGCCCg -3'
miRNA:   3'- cAGCGccaGGGCG-----------UGCUG-GGUC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 193744 0.66 0.649142
Target:  5'- -cCGCGGcUUCgGCgaGCGACCgCcGGCCCc -3'
miRNA:   3'- caGCGCC-AGGgCG--UGCUGG-GuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 189864 0.68 0.535932
Target:  5'- cGUCgGCGucGUCgCCGCcgacCGGCCCgcucGGGCCCg -3'
miRNA:   3'- -CAG-CGC--CAG-GGCGu---GCUGGG----UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 189559 0.82 0.08358
Target:  5'- aUgGCGGUCCCGCucggucggcCGGCCCGGGCCg -3'
miRNA:   3'- cAgCGCCAGGGCGu--------GCUGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 188634 0.68 0.573214
Target:  5'- cUCGCGGaCCCGggucuugaGCaGCCC-GGCCCg -3'
miRNA:   3'- cAGCGCCaGGGCg-------UGcUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 188546 0.69 0.516694
Target:  5'- uGUCGCGGcggcggguacugcUgCCGCACGugCCGacacaacGCCCg -3'
miRNA:   3'- -CAGCGCC-------------AgGGCGUGCugGGUc------CGGG- -5'
10848 5' -63.2 NC_002794.1 + 188287 0.66 0.658648
Target:  5'- -aUGCaGGgcgCCgCGCGCcgGACCC-GGCCCg -3'
miRNA:   3'- caGCG-CCa--GG-GCGUG--CUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 187901 0.73 0.310587
Target:  5'- -gCGCGGUgCCGCuCG-CCCgccGGGCCCc -3'
miRNA:   3'- caGCGCCAgGGCGuGCuGGG---UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 187660 0.68 0.55448
Target:  5'- cUCGCGGUCCacgacgauCGgGCGAUgCGGGUCg -3'
miRNA:   3'- cAGCGCCAGG--------GCgUGCUGgGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 187588 0.66 0.658648
Target:  5'- -gCGCGGcCgCCGuCGCGacGCCCGGcgucGCCCa -3'
miRNA:   3'- caGCGCCaG-GGC-GUGC--UGGGUC----CGGG- -5'
10848 5' -63.2 NC_002794.1 + 187046 0.7 0.422103
Target:  5'- cUCGCaGUCCCGgA--GCCCGcGGCCCg -3'
miRNA:   3'- cAGCGcCAGGGCgUgcUGGGU-CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 186887 0.72 0.324076
Target:  5'- cUCGCGGUCCggcgucCGCAgGACCagguuccGGCCCc -3'
miRNA:   3'- cAGCGCCAGG------GCGUgCUGGgu-----CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 186647 0.66 0.648191
Target:  5'- -gCGCGGgucggCCGCGCGcACCCcguacacGGcGCCCg -3'
miRNA:   3'- caGCGCCag---GGCGUGC-UGGG-------UC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 186450 0.66 0.696414
Target:  5'- -gCGCaGGUCuuGCugGuucagccgacGCCCucgcuccuggaGGGCCCg -3'
miRNA:   3'- caGCG-CCAGggCGugC----------UGGG-----------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 186017 0.72 0.337997
Target:  5'- cUC-CGGgCCCGgGCccgGACCCGGGCCCc -3'
miRNA:   3'- cAGcGCCaGGGCgUG---CUGGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 185949 0.67 0.620584
Target:  5'- cUCGCGGccgcgCCCGUuucccugucCGuuCCCGGGUCCg -3'
miRNA:   3'- cAGCGCCa----GGGCGu--------GCu-GGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 184486 0.74 0.255189
Target:  5'- -gCGCGGggccccggacgCCCGgGCGGCgCGGGCCCc -3'
miRNA:   3'- caGCGCCa----------GGGCgUGCUGgGUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.