miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 183523 0.71 0.382323
Target:  5'- uGUCGCGGcCgUGCGCGcCCCGuccGCCCg -3'
miRNA:   3'- -CAGCGCCaGgGCGUGCuGGGUc--CGGG- -5'
10848 5' -63.2 NC_002794.1 + 183483 0.75 0.23329
Target:  5'- -cCGCGGcccgaucCCCGCGCGaACCC-GGCCCc -3'
miRNA:   3'- caGCGCCa------GGGCGUGC-UGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 183334 0.67 0.640578
Target:  5'- cGUCGCccaGGUUCaGCACGuacagcgcgccggacCCCAGGUCCc -3'
miRNA:   3'- -CAGCG---CCAGGgCGUGCu--------------GGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 183006 0.72 0.352348
Target:  5'- -cCGCGGgcgcCCCGCGCGcGCCCGccGCCCc -3'
miRNA:   3'- caGCGCCa---GGGCGUGC-UGGGUc-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 182754 0.67 0.592092
Target:  5'- -aCGCGGUacagguagcagCCGCACG-CCC-GGUCCa -3'
miRNA:   3'- caGCGCCAg----------GGCGUGCuGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 181905 0.66 0.668134
Target:  5'- -gCGCGGgucguacaccaCCCGCGCGAcggccgucuCCCGGGagCCg -3'
miRNA:   3'- caGCGCCa----------GGGCGUGCU---------GGGUCCg-GG- -5'
10848 5' -63.2 NC_002794.1 + 181613 0.67 0.620584
Target:  5'- cGUUGCcGcaUCUCGCACGuguagggcggaGCCCGGGCuCCg -3'
miRNA:   3'- -CAGCGcC--AGGGCGUGC-----------UGGGUCCG-GG- -5'
10848 5' -63.2 NC_002794.1 + 180914 0.67 0.61107
Target:  5'- -cCGCGGUCUCGC-CGGCgCCgucggAGGUCg -3'
miRNA:   3'- caGCGCCAGGGCGuGCUG-GG-----UCCGGg -5'
10848 5' -63.2 NC_002794.1 + 180283 0.69 0.507631
Target:  5'- cUCGCGG-CCCGCGCcGCCgCAacacgccGGCCg -3'
miRNA:   3'- cAGCGCCaGGGCGUGcUGG-GU-------CCGGg -5'
10848 5' -63.2 NC_002794.1 + 178022 0.68 0.563826
Target:  5'- cGUCGgGGUCaCCGCccCGAUCC-GGCUg -3'
miRNA:   3'- -CAGCgCCAG-GGCGu-GCUGGGuCCGGg -5'
10848 5' -63.2 NC_002794.1 + 176607 0.68 0.579807
Target:  5'- --aGCGG-CCgGCACGGCCauccucguggcguucGGCCCg -3'
miRNA:   3'- cagCGCCaGGgCGUGCUGGgu-------------CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 154348 0.79 0.117857
Target:  5'- -cCGCGGccgagcUCCCGCGCGGUCCAGGCCg -3'
miRNA:   3'- caGCGCC------AGGGCGUGCUGGGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 153939 0.71 0.413948
Target:  5'- -cCGCGGacaCUCGCugGcucuACCCuGGCCCg -3'
miRNA:   3'- caGCGCCa--GGGCGugC----UGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 152582 0.69 0.499532
Target:  5'- -cCGCGGcggCCGCcacgucccuGCGGCgCGGGCCCa -3'
miRNA:   3'- caGCGCCag-GGCG---------UGCUGgGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 151585 0.66 0.687025
Target:  5'- --gGCGG-CgCGCGCcgccGCCgCGGGCCCg -3'
miRNA:   3'- cagCGCCaGgGCGUGc---UGG-GUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 151097 0.66 0.668134
Target:  5'- -cCGCGGUucaCCUGCGaGACCUucugGGaGCCCg -3'
miRNA:   3'- caGCGCCA---GGGCGUgCUGGG----UC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 150778 0.8 0.104325
Target:  5'- cGUCGuCGGgCUCGUGCGACuCCAGGCCCc -3'
miRNA:   3'- -CAGC-GCCaGGGCGUGCUG-GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 145957 0.72 0.352348
Target:  5'- aGUCGCGaGcgCCCaGCGCG-CCCAGcgcGCCCa -3'
miRNA:   3'- -CAGCGC-Ca-GGG-CGUGCuGGGUC---CGGG- -5'
10848 5' -63.2 NC_002794.1 + 144405 0.68 0.563826
Target:  5'- --aGUGcGUCgCGCugGGCCCgAGcGCCCu -3'
miRNA:   3'- cagCGC-CAGgGCGugCUGGG-UC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 138824 0.71 0.382323
Target:  5'- -cCGCGGUCUCGagcuCGCGA-CCGGGCUCu -3'
miRNA:   3'- caGCGCCAGGGC----GUGCUgGGUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.