miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10848 5' -63.2 NC_002794.1 + 56169 0.66 0.696414
Target:  5'- --aGCGGcCCCgguGCACGuagaGCaCCGGGCCg -3'
miRNA:   3'- cagCGCCaGGG---CGUGC----UG-GGUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 36229 0.66 0.696414
Target:  5'- -cCGCaGG-CCCGguCGAUaUAGGCCCc -3'
miRNA:   3'- caGCG-CCaGGGCguGCUGgGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 90913 0.66 0.696414
Target:  5'- aUCGU-GUCCCGCACGGaggaCCAcGGCg- -3'
miRNA:   3'- cAGCGcCAGGGCGUGCUg---GGU-CCGgg -5'
10848 5' -63.2 NC_002794.1 + 74684 0.66 0.696414
Target:  5'- -aCGCGGa-CCGaacucaucCACGACCCGGGCa- -3'
miRNA:   3'- caGCGCCagGGC--------GUGCUGGGUCCGgg -5'
10848 5' -63.2 NC_002794.1 + 19512 0.65 0.702026
Target:  5'- gGUCGCGccgcucggagcgCCgGCGCGGCgC-GGCCCg -3'
miRNA:   3'- -CAGCGCca----------GGgCGUGCUGgGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 130276 0.66 0.687025
Target:  5'- --aGCGGUUgagccgCCGCuCGcuCCCGGGUCCg -3'
miRNA:   3'- cagCGCCAG------GGCGuGCu-GGGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 151585 0.66 0.687025
Target:  5'- --gGCGG-CgCGCGCcgccGCCgCGGGCCCg -3'
miRNA:   3'- cagCGCCaGgGCGUGc---UGG-GUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 19265 0.66 0.658648
Target:  5'- -cCGCGGcCCCcgugGCGCGuCuCCuGGCCUg -3'
miRNA:   3'- caGCGCCaGGG----CGUGCuG-GGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 188287 0.66 0.658648
Target:  5'- -aUGCaGGgcgCCgCGCGCcgGACCC-GGCCCg -3'
miRNA:   3'- caGCG-CCa--GG-GCGUG--CUGGGuCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 42468 0.66 0.658648
Target:  5'- cGUCGUccauGUCgCGCGCG-CCgGGGCCg -3'
miRNA:   3'- -CAGCGc---CAGgGCGUGCuGGgUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 193832 0.66 0.662445
Target:  5'- cGUCGCGGcgCCgGCACuuauuauaguGugCCcacccaccccuccccGGGCCCc -3'
miRNA:   3'- -CAGCGCCa-GGgCGUG----------CugGG---------------UCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 35779 0.66 0.667187
Target:  5'- cGUCGcCGGcgucgucUCCgGCGUGACCCuGcGCCCc -3'
miRNA:   3'- -CAGC-GCC-------AGGgCGUGCUGGGuC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 98904 0.66 0.667187
Target:  5'- -gCGCGGUCUCG-ACGACUucaugagCGGGCUg -3'
miRNA:   3'- caGCGCCAGGGCgUGCUGG-------GUCCGGg -5'
10848 5' -63.2 NC_002794.1 + 114803 0.66 0.667187
Target:  5'- cUCGCaGGUCCCGgA-GGCCCGcgcgcucuccggcGGCCg -3'
miRNA:   3'- cAGCG-CCAGGGCgUgCUGGGU-------------CCGGg -5'
10848 5' -63.2 NC_002794.1 + 102391 0.66 0.668134
Target:  5'- -aCGUGGUggaacuggucuUCCGCgacGCGGCCguGGCCg -3'
miRNA:   3'- caGCGCCA-----------GGGCG---UGCUGGguCCGGg -5'
10848 5' -63.2 NC_002794.1 + 181905 0.66 0.668134
Target:  5'- -gCGCGGgucguacaccaCCCGCGCGAcggccgucuCCCGGGagCCg -3'
miRNA:   3'- caGCGCCa----------GGGCGUGCU---------GGGUCCg-GG- -5'
10848 5' -63.2 NC_002794.1 + 151097 0.66 0.668134
Target:  5'- -cCGCGGUucaCCUGCGaGACCUucugGGaGCCCg -3'
miRNA:   3'- caGCGCCA---GGGCGUgCUGGG----UC-CGGG- -5'
10848 5' -63.2 NC_002794.1 + 41245 0.66 0.668134
Target:  5'- -cCGCGG--CCGC-CGACgCCGgcGGCCCg -3'
miRNA:   3'- caGCGCCagGGCGuGCUG-GGU--CCGGG- -5'
10848 5' -63.2 NC_002794.1 + 134822 0.66 0.677596
Target:  5'- -cCGauCGGUCCagcgacaGCgACGAagaaCCGGGCCCg -3'
miRNA:   3'- caGC--GCCAGGg------CG-UGCUg---GGUCCGGG- -5'
10848 5' -63.2 NC_002794.1 + 193775 0.66 0.677596
Target:  5'- cUCGCucgCCCGCucgaucgcccgACGACgCCGGcGCCCg -3'
miRNA:   3'- cAGCGccaGGGCG-----------UGCUG-GGUC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.