miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 95825 0.66 0.995247
Target:  5'- gGCG-GCCG-GGGGAGCGGcGGCGGCg -3'
miRNA:   3'- gCGUgUGGCaCCUCUUGUUcCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 118148 0.66 0.995247
Target:  5'- gGUGCACCGUcauGGGGcuCAGGGugucguaggcgGCGACg -3'
miRNA:   3'- gCGUGUGGCA---CCUCuuGUUCC-----------UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 143588 0.66 0.995247
Target:  5'- gGCgGCGCUGUGGucGAACAccGGcACGACg -3'
miRNA:   3'- gCG-UGUGGCACCu-CUUGUu-CC-UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 191849 0.66 0.994801
Target:  5'- aCGCGCaAUCGUGGucguGAAaggccggcggcggaGGGGGCGGCg -3'
miRNA:   3'- -GCGUG-UGGCACCu---CUUg-------------UUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 107550 0.66 0.994486
Target:  5'- gGCGacgacCGCgGUGGGGGAgGAGGAgGAg -3'
miRNA:   3'- gCGU-----GUGgCACCUCUUgUUCCUgUUg -5'
10849 3' -51.8 NC_002794.1 + 136125 0.66 0.994486
Target:  5'- gCGgGCGaaGUcgaagaGGAGGGCGAGGACGGg -3'
miRNA:   3'- -GCgUGUggCA------CCUCUUGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 42481 0.66 0.994486
Target:  5'- gCGCGCGCCGgggccgagcGGAGAgugugagaaagaGCGAGaGAgAGCc -3'
miRNA:   3'- -GCGUGUGGCa--------CCUCU------------UGUUC-CUgUUG- -5'
10849 3' -51.8 NC_002794.1 + 185350 0.66 0.994486
Target:  5'- uCGCGCGCCGccgcgagcGGGccgaacgccgcGAGCGAGGcCAGCc -3'
miRNA:   3'- -GCGUGUGGCa-------CCU-----------CUUGUUCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 132189 0.66 0.994486
Target:  5'- aCGCu--CCGacUGGGGGACGGGuGCGACg -3'
miRNA:   3'- -GCGuguGGC--ACCUCUUGUUCcUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 51808 0.66 0.994069
Target:  5'- gGCACcaacaagAUCGUGGAGGACAcgccccugaucacGGACGAg -3'
miRNA:   3'- gCGUG-------UGGCACCUCUUGUu------------CCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 118986 0.66 0.993628
Target:  5'- aGCACGuCCGggcgcggGGAGAcgAGGGGgAACa -3'
miRNA:   3'- gCGUGU-GGCa------CCUCUugUUCCUgUUG- -5'
10849 3' -51.8 NC_002794.1 + 34214 0.66 0.993628
Target:  5'- cCGCAC-CUG-GGAGcGCAAGGuGCAGg -3'
miRNA:   3'- -GCGUGuGGCaCCUCuUGUUCC-UGUUg -5'
10849 3' -51.8 NC_002794.1 + 129279 0.66 0.993628
Target:  5'- aGCGgGCCGgucucucGGuGGuaccGCGAGGAUAGCa -3'
miRNA:   3'- gCGUgUGGCa------CCuCU----UGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 44731 0.66 0.993628
Target:  5'- gGCcgGCGCCGccGGAGGGCuaaGACGGCg -3'
miRNA:   3'- gCG--UGUGGCa-CCUCUUGuucCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 176931 0.66 0.993628
Target:  5'- gGUuCAUCGUGGccgcuGAgugaaACGGGGGCAGCg -3'
miRNA:   3'- gCGuGUGGCACCu----CU-----UGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 107028 0.66 0.993628
Target:  5'- cCGCgGCGCCGcUGGGGAcccccGCGucGGaGGCGGCg -3'
miRNA:   3'- -GCG-UGUGGC-ACCUCU-----UGU--UC-CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 190743 0.66 0.993628
Target:  5'- cCGC-CGCCGUcuc-GACGGGGGCGGCg -3'
miRNA:   3'- -GCGuGUGGCAccucUUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 96370 0.66 0.992666
Target:  5'- aGgGCACCGUGGcgccGAGCGAguGGAUggUc -3'
miRNA:   3'- gCgUGUGGCACCu---CUUGUU--CCUGuuG- -5'
10849 3' -51.8 NC_002794.1 + 103611 0.66 0.992036
Target:  5'- gGCACGCgCucuUGGAGAucugcucguugcuguACGGGGACAGg -3'
miRNA:   3'- gCGUGUG-Gc--ACCUCU---------------UGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 93138 0.66 0.991593
Target:  5'- aCGCGCugcccaaguCCGUGGccaucggcaAGAugGAGGAguuCAACg -3'
miRNA:   3'- -GCGUGu--------GGCACC---------UCUugUUCCU---GUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.