Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10849 | 3' | -51.8 | NC_002794.1 | + | 142472 | 0.67 | 0.987613 |
Target: 5'- gCGCcgGCACCGUGGAcgcgugcGGCGccGGCAGCg -3' miRNA: 3'- -GCG--UGUGGCACCUc------UUGUucCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 138309 | 0.67 | 0.989075 |
Target: 5'- cCGCACGCUGUcGGGGAgGAGGuCuuCg -3' miRNA: 3'- -GCGUGUGGCAcCUCUUgUUCCuGuuG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 157194 | 0.67 | 0.988935 |
Target: 5'- uCGguCGCCGaUGGAGAcagguccGCAcGGACAc- -3' miRNA: 3'- -GCguGUGGC-ACCUCU-------UGUuCCUGUug -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 53616 | 0.67 | 0.989075 |
Target: 5'- cCGcCGCAgCGUcGGAcGGACGAGGuCGGCc -3' miRNA: 3'- -GC-GUGUgGCA-CCU-CUUGUUCCuGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 136911 | 0.67 | 0.989075 |
Target: 5'- uCGUACACCGUcaucgGGAGcccCGAGuuGACGGCg -3' miRNA: 3'- -GCGUGUGGCA-----CCUCuu-GUUC--CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 19815 | 0.67 | 0.988651 |
Target: 5'- cCGCGCGCCGgacUGGAucaagcugcugcacGGcuACGGGGACuGCg -3' miRNA: 3'- -GCGUGUGGC---ACCU--------------CU--UGUUCCUGuUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 55258 | 0.67 | 0.988651 |
Target: 5'- aGgACGCCGaagagccgGGGGGcggcgguggcggcgACGAGGGCGGCg -3' miRNA: 3'- gCgUGUGGCa-------CCUCU--------------UGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 113122 | 0.68 | 0.972805 |
Target: 5'- gGCGCuucuCCGUGuccGAGAGgAAGGGCGGg -3' miRNA: 3'- gCGUGu---GGCAC---CUCUUgUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 122569 | 0.68 | 0.969939 |
Target: 5'- aCGCGCAgCGgcugcuggGGAuGAugAAGGACGGg -3' miRNA: 3'- -GCGUGUgGCa-------CCU-CUugUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 148731 | 0.68 | 0.975468 |
Target: 5'- uGCGCcuacCCGUGGuucGAACGAGacuuuGACGACg -3' miRNA: 3'- gCGUGu---GGCACCu--CUUGUUC-----CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 33878 | 0.68 | 0.975468 |
Target: 5'- aGCGgAUCGUGGAGcuCAuGGAgCGGCa -3' miRNA: 3'- gCGUgUGGCACCUCuuGUuCCU-GUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 110055 | 0.68 | 0.975468 |
Target: 5'- uCGCGgAuCCGUcGGAGAGCGcGGAUcGCg -3' miRNA: 3'- -GCGUgU-GGCA-CCUCUUGUuCCUGuUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 108377 | 0.68 | 0.975468 |
Target: 5'- cCGgGCGCCGgagcGGGGAGCgGAGGcuccgGCGGCg -3' miRNA: 3'- -GCgUGUGGCa---CCUCUUG-UUCC-----UGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 106276 | 0.68 | 0.975468 |
Target: 5'- gCGuCGCGCCGccucGGAcGGCGAGaGACGACg -3' miRNA: 3'- -GC-GUGUGGCa---CCUcUUGUUC-CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 72412 | 0.68 | 0.977936 |
Target: 5'- aGCACACCGccgcGGcGGAgGAGGAgcCGGCg -3' miRNA: 3'- gCGUGUGGCa---CCuCUUgUUCCU--GUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 96936 | 0.68 | 0.977936 |
Target: 5'- aGCACGCCGUcggagucuccGGAGAcCucGGcCGACa -3' miRNA: 3'- gCGUGUGGCA----------CCUCUuGuuCCuGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 52301 | 0.68 | 0.977936 |
Target: 5'- aCGcCugGCCGUGGAGAGuuucaucgcCAAGuuCAACu -3' miRNA: 3'- -GC-GugUGGCACCUCUU---------GUUCcuGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 265 | 0.68 | 0.977936 |
Target: 5'- cCGCGCG-CGcGGAc-GCGAGGACGGCg -3' miRNA: 3'- -GCGUGUgGCaCCUcuUGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 13077 | 0.68 | 0.979774 |
Target: 5'- cCGCGCgACCGgcgcgaagucccGGGGGACGAGGugcguuCGGCg -3' miRNA: 3'- -GCGUG-UGGCa-----------CCUCUUGUUCCu-----GUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 114500 | 0.68 | 0.969939 |
Target: 5'- aCGCGCGCCGgaccgucccGGAGcgaguCGAGcGGCAGCc -3' miRNA: 3'- -GCGUGUGGCa--------CCUCuu---GUUC-CUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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