miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 47152 1.12 0.00632
Target:  5'- aCGCACACCGUGGAGAACAAGGACAACg -3'
miRNA:   3'- -GCGUGUGGCACCUCUUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 101821 0.79 0.538544
Target:  5'- gGCGCGCCGUgcgcgaggccaugcgGGAGuGCGAGGACGAg -3'
miRNA:   3'- gCGUGUGGCA---------------CCUCuUGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 179946 0.76 0.698973
Target:  5'- uCGCGgGCCG-GG-GAGCGAGcGACAGCa -3'
miRNA:   3'- -GCGUgUGGCaCCuCUUGUUC-CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 165784 0.74 0.768335
Target:  5'- -aUACACCGUGGAGAAUugaucGGCAACg -3'
miRNA:   3'- gcGUGUGGCACCUCUUGuuc--CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 56597 0.74 0.787177
Target:  5'- cCGC-CGCCGgccuccucaUGGAGAACu-GGACGGCg -3'
miRNA:   3'- -GCGuGUGGC---------ACCUCUUGuuCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 187477 0.74 0.787177
Target:  5'- gCGCGCGCCGggccGAGGACGAGGccgcgcagGCGGCc -3'
miRNA:   3'- -GCGUGUGGCac--CUCUUGUUCC--------UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 79992 0.73 0.814342
Target:  5'- aGgAgGCgGaGGAGGACGAGGACGGCg -3'
miRNA:   3'- gCgUgUGgCaCCUCUUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 98040 0.73 0.848147
Target:  5'- gGCuCACCGUGGuuuGGCAAGGAUuGCg -3'
miRNA:   3'- gCGuGUGGCACCuc-UUGUUCCUGuUG- -5'
10849 3' -51.8 NC_002794.1 + 94152 0.72 0.856115
Target:  5'- gGCgGCGCUGgacgguggGGGGGACGGGGACGAa -3'
miRNA:   3'- gCG-UGUGGCa-------CCUCUUGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 100463 0.72 0.878742
Target:  5'- gGCGCcuucCCGguggcGGAGAACcuGGACGACg -3'
miRNA:   3'- gCGUGu---GGCa----CCUCUUGuuCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 144612 0.72 0.892709
Target:  5'- aGCAgACgGUGGAGGAgAuGGGCAAg -3'
miRNA:   3'- gCGUgUGgCACCUCUUgUuCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 57094 0.71 0.899343
Target:  5'- uGCGCACCGUcaAGAACAcGGcCGACg -3'
miRNA:   3'- gCGUGUGGCAccUCUUGUuCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 125428 0.71 0.905739
Target:  5'- gCGCACGUCGcGaaucGGAACAAGGGCGACg -3'
miRNA:   3'- -GCGUGUGGCaCc---UCUUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 91073 0.71 0.917806
Target:  5'- uGUACGCCGUGGuGGGCuacGGGCu-- -3'
miRNA:   3'- gCGUGUGGCACCuCUUGuu-CCUGuug -5'
10849 3' -51.8 NC_002794.1 + 14589 0.71 0.923473
Target:  5'- aGCGgGCCGUGGcGAGCGcgccGGGCAccGCg -3'
miRNA:   3'- gCGUgUGGCACCuCUUGUu---CCUGU--UG- -5'
10849 3' -51.8 NC_002794.1 + 17993 0.7 0.928895
Target:  5'- gGC-CGCCG-GcGAGuacuACGAGGACGGCg -3'
miRNA:   3'- gCGuGUGGCaC-CUCu---UGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 92439 0.7 0.939003
Target:  5'- aCGCugGCCGUGcGGGGccGCGcGGACuuCa -3'
miRNA:   3'- -GCGugUGGCAC-CUCU--UGUuCCUGuuG- -5'
10849 3' -51.8 NC_002794.1 + 107755 0.7 0.939003
Target:  5'- uCGCGCGCCGcUGGcuGGAGCGcgcucgcccGGcGACGACc -3'
miRNA:   3'- -GCGUGUGGC-ACC--UCUUGU---------UC-CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 58937 0.7 0.939003
Target:  5'- uGCACGCCaUGGA---CGAGGACGAg -3'
miRNA:   3'- gCGUGUGGcACCUcuuGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 107960 0.7 0.943691
Target:  5'- cCGCGCGagaaGcUGGAGAACuuuuuGGACGGCg -3'
miRNA:   3'- -GCGUGUgg--C-ACCUCUUGuu---CCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.