miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 107960 0.7 0.943691
Target:  5'- cCGCGCGagaaGcUGGAGAACuuuuuGGACGGCg -3'
miRNA:   3'- -GCGUGUgg--C-ACCUCUUGuu---CCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 21617 0.69 0.952345
Target:  5'- cCGCGCcgucGCCG-GGAGGacgACGAGGAagaaGACg -3'
miRNA:   3'- -GCGUG----UGGCaCCUCU---UGUUCCUg---UUG- -5'
10849 3' -51.8 NC_002794.1 + 91160 0.69 0.95515
Target:  5'- uGgGCGCCGUGGAGGccuuCAAGcucccccuguacccGGCGACg -3'
miRNA:   3'- gCgUGUGGCACCUCUu---GUUC--------------CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 121920 0.69 0.960058
Target:  5'- uCGCcCGCCGcGGGGGAaGAGGcCGACg -3'
miRNA:   3'- -GCGuGUGGCaCCUCUUgUUCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 54939 0.69 0.966863
Target:  5'- aGCGCgACCGUGGucAGCucGGAgAACu -3'
miRNA:   3'- gCGUG-UGGCACCucUUGuuCCUgUUG- -5'
10849 3' -51.8 NC_002794.1 + 40524 0.68 0.969939
Target:  5'- cCGaCGCGCCGacgGGAGA-CGAGGGggcCGGCg -3'
miRNA:   3'- -GC-GUGUGGCa--CCUCUuGUUCCU---GUUG- -5'
10849 3' -51.8 NC_002794.1 + 122569 0.68 0.969939
Target:  5'- aCGCGCAgCGgcugcuggGGAuGAugAAGGACGGg -3'
miRNA:   3'- -GCGUGUgGCa-------CCU-CUugUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 114500 0.68 0.969939
Target:  5'- aCGCGCGCCGgaccgucccGGAGcgaguCGAGcGGCAGCc -3'
miRNA:   3'- -GCGUGUGGCa--------CCUCuu---GUUC-CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 113122 0.68 0.972805
Target:  5'- gGCGCuucuCCGUGuccGAGAGgAAGGGCGGg -3'
miRNA:   3'- gCGUGu---GGCAC---CUCUUgUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 106276 0.68 0.975468
Target:  5'- gCGuCGCGCCGccucGGAcGGCGAGaGACGACg -3'
miRNA:   3'- -GC-GUGUGGCa---CCUcUUGUUC-CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 108377 0.68 0.975468
Target:  5'- cCGgGCGCCGgagcGGGGAGCgGAGGcuccgGCGGCg -3'
miRNA:   3'- -GCgUGUGGCa---CCUCUUG-UUCC-----UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 110055 0.68 0.975468
Target:  5'- uCGCGgAuCCGUcGGAGAGCGcGGAUcGCg -3'
miRNA:   3'- -GCGUgU-GGCA-CCUCUUGUuCCUGuUG- -5'
10849 3' -51.8 NC_002794.1 + 33878 0.68 0.975468
Target:  5'- aGCGgAUCGUGGAGcuCAuGGAgCGGCa -3'
miRNA:   3'- gCGUgUGGCACCUCuuGUuCCU-GUUG- -5'
10849 3' -51.8 NC_002794.1 + 148731 0.68 0.975468
Target:  5'- uGCGCcuacCCGUGGuucGAACGAGacuuuGACGACg -3'
miRNA:   3'- gCGUGu---GGCACCu--CUUGUUC-----CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 96936 0.68 0.977936
Target:  5'- aGCACGCCGUcggagucuccGGAGAcCucGGcCGACa -3'
miRNA:   3'- gCGUGUGGCA----------CCUCUuGuuCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 72412 0.68 0.977936
Target:  5'- aGCACACCGccgcGGcGGAgGAGGAgcCGGCg -3'
miRNA:   3'- gCGUGUGGCa---CCuCUUgUUCCU--GUUG- -5'
10849 3' -51.8 NC_002794.1 + 52301 0.68 0.977936
Target:  5'- aCGcCugGCCGUGGAGAGuuucaucgcCAAGuuCAACu -3'
miRNA:   3'- -GC-GugUGGCACCUCUU---------GUUCcuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 265 0.68 0.977936
Target:  5'- cCGCGCG-CGcGGAc-GCGAGGACGGCg -3'
miRNA:   3'- -GCGUGUgGCaCCUcuUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 13077 0.68 0.979774
Target:  5'- cCGCGCgACCGgcgcgaagucccGGGGGACGAGGugcguuCGGCg -3'
miRNA:   3'- -GCGUG-UGGCa-----------CCUCUUGUUCCu-----GUUG- -5'
10849 3' -51.8 NC_002794.1 + 116029 0.68 0.980215
Target:  5'- gGCGCggggACCGgagaGGAGAGCGcagGGGGgAGCg -3'
miRNA:   3'- gCGUG----UGGCa---CCUCUUGU---UCCUgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.