miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 142591 0.67 0.984057
Target:  5'- gGCGCGCCcUGGGGGAUGAcgagcuggcgcacGGGCGAg -3'
miRNA:   3'- gCGUGUGGcACCUCUUGUU-------------CCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 38721 0.67 0.984242
Target:  5'- gGC-CGCCGaaaUGGGGAccucGCAcguGGACGGCa -3'
miRNA:   3'- gCGuGUGGC---ACCUCU----UGUu--CCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 142993 0.67 0.984242
Target:  5'- uGCcCGCCGUGGccaGGAACccGGuCAGCg -3'
miRNA:   3'- gCGuGUGGCACC---UCUUGuuCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 98286 0.67 0.984966
Target:  5'- gGCGCACCGgGGAGAugcugcacgagcugaGCAAGauCAACc -3'
miRNA:   3'- gCGUGUGGCaCCUCU---------------UGUUCcuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 155326 0.67 0.986005
Target:  5'- aGCGUAUCGUGGGGAACAacAGGuuguGCu -3'
miRNA:   3'- gCGUGUGGCACCUCUUGU--UCCugu-UG- -5'
10849 3' -51.8 NC_002794.1 + 148063 0.67 0.987459
Target:  5'- cCGCGCucugggaGCCG-GGAguggccucGAGCGAGGAgCAGCu -3'
miRNA:   3'- -GCGUG-------UGGCaCCU--------CUUGUUCCU-GUUG- -5'
10849 3' -51.8 NC_002794.1 + 132312 0.67 0.987613
Target:  5'- -cCACAgCGUGGuGAuCGGGGACAu- -3'
miRNA:   3'- gcGUGUgGCACCuCUuGUUCCUGUug -5'
10849 3' -51.8 NC_002794.1 + 142472 0.67 0.987613
Target:  5'- gCGCcgGCACCGUGGAcgcgugcGGCGccGGCAGCg -3'
miRNA:   3'- -GCG--UGUGGCACCUc------UUGUucCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 19815 0.67 0.988651
Target:  5'- cCGCGCGCCGgacUGGAucaagcugcugcacGGcuACGGGGACuGCg -3'
miRNA:   3'- -GCGUGUGGC---ACCU--------------CU--UGUUCCUGuUG- -5'
10849 3' -51.8 NC_002794.1 + 55258 0.67 0.988651
Target:  5'- aGgACGCCGaagagccgGGGGGcggcgguggcggcgACGAGGGCGGCg -3'
miRNA:   3'- gCgUGUGGCa-------CCUCU--------------UGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 157194 0.67 0.988935
Target:  5'- uCGguCGCCGaUGGAGAcagguccGCAcGGACAc- -3'
miRNA:   3'- -GCguGUGGC-ACCUCU-------UGUuCCUGUug -5'
10849 3' -51.8 NC_002794.1 + 53616 0.67 0.989075
Target:  5'- cCGcCGCAgCGUcGGAcGGACGAGGuCGGCc -3'
miRNA:   3'- -GC-GUGUgGCA-CCU-CUUGUUCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 136911 0.67 0.989075
Target:  5'- uCGUACACCGUcaucgGGAGcccCGAGuuGACGGCg -3'
miRNA:   3'- -GCGUGUGGCA-----CCUCuu-GUUC--CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 138309 0.67 0.989075
Target:  5'- cCGCACGCUGUcGGGGAgGAGGuCuuCg -3'
miRNA:   3'- -GCGUGUGGCAcCUCUUgUUCCuGuuG- -5'
10849 3' -51.8 NC_002794.1 + 13591 0.66 0.989885
Target:  5'- gGCACgACCGUcguccggGGAGAACuccaagaacuggaaGAGGACGu- -3'
miRNA:   3'- gCGUG-UGGCA-------CCUCUUG--------------UUCCUGUug -5'
10849 3' -51.8 NC_002794.1 + 113689 0.66 0.990015
Target:  5'- cCGC-CACCGUcGGcagcgccagguucuGGcuCAGGGACGGCg -3'
miRNA:   3'- -GCGuGUGGCA-CC--------------UCuuGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 37290 0.66 0.990398
Target:  5'- gCGUACAacgacaCGUaGGGGAACGcGGGGCAGa -3'
miRNA:   3'- -GCGUGUg-----GCA-CCUCUUGU-UCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 153010 0.66 0.990398
Target:  5'- aGCACGgCGgacUGGGcGACGGGGACGGg -3'
miRNA:   3'- gCGUGUgGC---ACCUcUUGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 191656 0.66 0.990398
Target:  5'- aGCcCGCCG-GGGGAcgGCGccGGCAGCg -3'
miRNA:   3'- gCGuGUGGCaCCUCU--UGUucCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 55144 0.66 0.991247
Target:  5'- gCGUcgGCACCG-GGAGAcACGAgucgagcgccgagcGGGCGACu -3'
miRNA:   3'- -GCG--UGUGGCaCCUCU-UGUU--------------CCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.