Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10849 | 3' | -51.8 | NC_002794.1 | + | 134163 | 0.66 | 0.991593 |
Target: 5'- uGCugGCCGUGGcc-GCGcGGAUGGCc -3' miRNA: 3'- gCGugUGGCACCucuUGUuCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 70291 | 0.66 | 0.991593 |
Target: 5'- aGCAgGCCG-GGGGGGCccGGGCGc- -3' miRNA: 3'- gCGUgUGGCaCCUCUUGuuCCUGUug -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107217 | 0.66 | 0.991593 |
Target: 5'- gCGC-CGCCG-GGcGGcgcgcGACGGGGGCGGCg -3' miRNA: 3'- -GCGuGUGGCaCC-UC-----UUGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 106364 | 0.66 | 0.991593 |
Target: 5'- gCGgGCGCCGguucgcgcGGAGGGCA--GACGGCg -3' miRNA: 3'- -GCgUGUGGCa-------CCUCUUGUucCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 93138 | 0.66 | 0.991593 |
Target: 5'- aCGCGCugcccaaguCCGUGGccaucggcaAGAugGAGGAguuCAACg -3' miRNA: 3'- -GCGUGu--------GGCACC---------UCUugUUCCU---GUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 95733 | 0.66 | 0.991593 |
Target: 5'- cCGCAgACCGuUGGAcgGGGCugguacucgcGGGGCGGCg -3' miRNA: 3'- -GCGUgUGGC-ACCU--CUUGu---------UCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 131171 | 0.66 | 0.991479 |
Target: 5'- gGCGC-CCGUcucgagccGGAGAcaGCAcggcgccGGGGCGGCg -3' miRNA: 3'- gCGUGuGGCA--------CCUCU--UGU-------UCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 55144 | 0.66 | 0.991247 |
Target: 5'- gCGUcgGCACCG-GGAGAcACGAgucgagcgccgagcGGGCGACu -3' miRNA: 3'- -GCG--UGUGGCaCCUCU-UGUU--------------CCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 37290 | 0.66 | 0.990398 |
Target: 5'- gCGUACAacgacaCGUaGGGGAACGcGGGGCAGa -3' miRNA: 3'- -GCGUGUg-----GCA-CCUCUUGU-UCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 153010 | 0.66 | 0.990398 |
Target: 5'- aGCACGgCGgacUGGGcGACGGGGACGGg -3' miRNA: 3'- gCGUGUgGC---ACCUcUUGUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 191656 | 0.66 | 0.990398 |
Target: 5'- aGCcCGCCG-GGGGAcgGCGccGGCAGCg -3' miRNA: 3'- gCGuGUGGCaCCUCU--UGUucCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 113689 | 0.66 | 0.990015 |
Target: 5'- cCGC-CACCGUcGGcagcgccagguucuGGcuCAGGGACGGCg -3' miRNA: 3'- -GCGuGUGGCA-CC--------------UCuuGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 13591 | 0.66 | 0.989885 |
Target: 5'- gGCACgACCGUcguccggGGAGAACuccaagaacuggaaGAGGACGu- -3' miRNA: 3'- gCGUG-UGGCA-------CCUCUUG--------------UUCCUGUug -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 136911 | 0.67 | 0.989075 |
Target: 5'- uCGUACACCGUcaucgGGAGcccCGAGuuGACGGCg -3' miRNA: 3'- -GCGUGUGGCA-----CCUCuu-GUUC--CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 53616 | 0.67 | 0.989075 |
Target: 5'- cCGcCGCAgCGUcGGAcGGACGAGGuCGGCc -3' miRNA: 3'- -GC-GUGUgGCA-CCU-CUUGUUCCuGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 138309 | 0.67 | 0.989075 |
Target: 5'- cCGCACGCUGUcGGGGAgGAGGuCuuCg -3' miRNA: 3'- -GCGUGUGGCAcCUCUUgUUCCuGuuG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 157194 | 0.67 | 0.988935 |
Target: 5'- uCGguCGCCGaUGGAGAcagguccGCAcGGACAc- -3' miRNA: 3'- -GCguGUGGC-ACCUCU-------UGUuCCUGUug -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 19815 | 0.67 | 0.988651 |
Target: 5'- cCGCGCGCCGgacUGGAucaagcugcugcacGGcuACGGGGACuGCg -3' miRNA: 3'- -GCGUGUGGC---ACCU--------------CU--UGUUCCUGuUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 55258 | 0.67 | 0.988651 |
Target: 5'- aGgACGCCGaagagccgGGGGGcggcgguggcggcgACGAGGGCGGCg -3' miRNA: 3'- gCgUGUGGCa-------CCUCU--------------UGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 132312 | 0.67 | 0.987613 |
Target: 5'- -cCACAgCGUGGuGAuCGGGGACAu- -3' miRNA: 3'- gcGUGUgGCACCuCUuGUUCCUGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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