miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 132312 0.67 0.987613
Target:  5'- -cCACAgCGUGGuGAuCGGGGACAu- -3'
miRNA:   3'- gcGUGUgGCACCuCUuGUUCCUGUug -5'
10849 3' -51.8 NC_002794.1 + 148063 0.67 0.987459
Target:  5'- cCGCGCucugggaGCCG-GGAguggccucGAGCGAGGAgCAGCu -3'
miRNA:   3'- -GCGUG-------UGGCaCCU--------CUUGUUCCU-GUUG- -5'
10849 3' -51.8 NC_002794.1 + 155326 0.67 0.986005
Target:  5'- aGCGUAUCGUGGGGAACAacAGGuuguGCu -3'
miRNA:   3'- gCGUGUGGCACCUCUUGU--UCCugu-UG- -5'
10849 3' -51.8 NC_002794.1 + 98286 0.67 0.984966
Target:  5'- gGCGCACCGgGGAGAugcugcacgagcugaGCAAGauCAACc -3'
miRNA:   3'- gCGUGUGGCaCCUCU---------------UGUUCcuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 38721 0.67 0.984242
Target:  5'- gGC-CGCCGaaaUGGGGAccucGCAcguGGACGGCa -3'
miRNA:   3'- gCGuGUGGC---ACCUCU----UGUu--CCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 142993 0.67 0.984242
Target:  5'- uGCcCGCCGUGGccaGGAACccGGuCAGCg -3'
miRNA:   3'- gCGuGUGGCACC---UCUUGuuCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 142591 0.67 0.984057
Target:  5'- gGCGCGCCcUGGGGGAUGAcgagcuggcgcacGGGCGAg -3'
miRNA:   3'- gCGUGUGGcACCUCUUGUU-------------CCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 116029 0.68 0.980215
Target:  5'- gGCGCggggACCGgagaGGAGAGCGcagGGGGgAGCg -3'
miRNA:   3'- gCGUG----UGGCa---CCUCUUGU---UCCUgUUG- -5'
10849 3' -51.8 NC_002794.1 + 13077 0.68 0.979774
Target:  5'- cCGCGCgACCGgcgcgaagucccGGGGGACGAGGugcguuCGGCg -3'
miRNA:   3'- -GCGUG-UGGCa-----------CCUCUUGUUCCu-----GUUG- -5'
10849 3' -51.8 NC_002794.1 + 265 0.68 0.977936
Target:  5'- cCGCGCG-CGcGGAc-GCGAGGACGGCg -3'
miRNA:   3'- -GCGUGUgGCaCCUcuUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 52301 0.68 0.977936
Target:  5'- aCGcCugGCCGUGGAGAGuuucaucgcCAAGuuCAACu -3'
miRNA:   3'- -GC-GugUGGCACCUCUU---------GUUCcuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 96936 0.68 0.977936
Target:  5'- aGCACGCCGUcggagucuccGGAGAcCucGGcCGACa -3'
miRNA:   3'- gCGUGUGGCA----------CCUCUuGuuCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 72412 0.68 0.977936
Target:  5'- aGCACACCGccgcGGcGGAgGAGGAgcCGGCg -3'
miRNA:   3'- gCGUGUGGCa---CCuCUUgUUCCU--GUUG- -5'
10849 3' -51.8 NC_002794.1 + 148731 0.68 0.975468
Target:  5'- uGCGCcuacCCGUGGuucGAACGAGacuuuGACGACg -3'
miRNA:   3'- gCGUGu---GGCACCu--CUUGUUC-----CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 33878 0.68 0.975468
Target:  5'- aGCGgAUCGUGGAGcuCAuGGAgCGGCa -3'
miRNA:   3'- gCGUgUGGCACCUCuuGUuCCU-GUUG- -5'
10849 3' -51.8 NC_002794.1 + 110055 0.68 0.975468
Target:  5'- uCGCGgAuCCGUcGGAGAGCGcGGAUcGCg -3'
miRNA:   3'- -GCGUgU-GGCA-CCUCUUGUuCCUGuUG- -5'
10849 3' -51.8 NC_002794.1 + 108377 0.68 0.975468
Target:  5'- cCGgGCGCCGgagcGGGGAGCgGAGGcuccgGCGGCg -3'
miRNA:   3'- -GCgUGUGGCa---CCUCUUG-UUCC-----UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 106276 0.68 0.975468
Target:  5'- gCGuCGCGCCGccucGGAcGGCGAGaGACGACg -3'
miRNA:   3'- -GC-GUGUGGCa---CCUcUUGUUC-CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 113122 0.68 0.972805
Target:  5'- gGCGCuucuCCGUGuccGAGAGgAAGGGCGGg -3'
miRNA:   3'- gCGUGu---GGCAC---CUCUUgUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 114500 0.68 0.969939
Target:  5'- aCGCGCGCCGgaccgucccGGAGcgaguCGAGcGGCAGCc -3'
miRNA:   3'- -GCGUGUGGCa--------CCUCuu---GUUC-CUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.