Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10849 | 3' | -51.8 | NC_002794.1 | + | 114500 | 0.68 | 0.969939 |
Target: 5'- aCGCGCGCCGgaccgucccGGAGcgaguCGAGcGGCAGCc -3' miRNA: 3'- -GCGUGUGGCa--------CCUCuu---GUUC-CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 122569 | 0.68 | 0.969939 |
Target: 5'- aCGCGCAgCGgcugcuggGGAuGAugAAGGACGGg -3' miRNA: 3'- -GCGUGUgGCa-------CCU-CUugUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 54939 | 0.69 | 0.966863 |
Target: 5'- aGCGCgACCGUGGucAGCucGGAgAACu -3' miRNA: 3'- gCGUG-UGGCACCucUUGuuCCUgUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 121920 | 0.69 | 0.960058 |
Target: 5'- uCGCcCGCCGcGGGGGAaGAGGcCGACg -3' miRNA: 3'- -GCGuGUGGCaCCUCUUgUUCCuGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 91160 | 0.69 | 0.95515 |
Target: 5'- uGgGCGCCGUGGAGGccuuCAAGcucccccuguacccGGCGACg -3' miRNA: 3'- gCgUGUGGCACCUCUu---GUUC--------------CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 21617 | 0.69 | 0.952345 |
Target: 5'- cCGCGCcgucGCCG-GGAGGacgACGAGGAagaaGACg -3' miRNA: 3'- -GCGUG----UGGCaCCUCU---UGUUCCUg---UUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 115960 | 0.7 | 0.943691 |
Target: 5'- cCGgGgACCGUGGGGGggagcgggACGGGGAgCGGCg -3' miRNA: 3'- -GCgUgUGGCACCUCU--------UGUUCCU-GUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107960 | 0.7 | 0.943691 |
Target: 5'- cCGCGCGagaaGcUGGAGAACuuuuuGGACGGCg -3' miRNA: 3'- -GCGUGUgg--C-ACCUCUUGuu---CCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 92439 | 0.7 | 0.939003 |
Target: 5'- aCGCugGCCGUGcGGGGccGCGcGGACuuCa -3' miRNA: 3'- -GCGugUGGCAC-CUCU--UGUuCCUGuuG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 58937 | 0.7 | 0.939003 |
Target: 5'- uGCACGCCaUGGA---CGAGGACGAg -3' miRNA: 3'- gCGUGUGGcACCUcuuGUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107755 | 0.7 | 0.939003 |
Target: 5'- uCGCGCGCCGcUGGcuGGAGCGcgcucgcccGGcGACGACc -3' miRNA: 3'- -GCGUGUGGC-ACC--UCUUGU---------UC-CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 17993 | 0.7 | 0.928895 |
Target: 5'- gGC-CGCCG-GcGAGuacuACGAGGACGGCg -3' miRNA: 3'- gCGuGUGGCaC-CUCu---UGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 14589 | 0.71 | 0.923473 |
Target: 5'- aGCGgGCCGUGGcGAGCGcgccGGGCAccGCg -3' miRNA: 3'- gCGUgUGGCACCuCUUGUu---CCUGU--UG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 91073 | 0.71 | 0.917806 |
Target: 5'- uGUACGCCGUGGuGGGCuacGGGCu-- -3' miRNA: 3'- gCGUGUGGCACCuCUUGuu-CCUGuug -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 125428 | 0.71 | 0.905739 |
Target: 5'- gCGCACGUCGcGaaucGGAACAAGGGCGACg -3' miRNA: 3'- -GCGUGUGGCaCc---UCUUGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 57094 | 0.71 | 0.899343 |
Target: 5'- uGCGCACCGUcaAGAACAcGGcCGACg -3' miRNA: 3'- gCGUGUGGCAccUCUUGUuCCuGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 144612 | 0.72 | 0.892709 |
Target: 5'- aGCAgACgGUGGAGGAgAuGGGCAAg -3' miRNA: 3'- gCGUgUGgCACCUCUUgUuCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 100463 | 0.72 | 0.878742 |
Target: 5'- gGCGCcuucCCGguggcGGAGAACcuGGACGACg -3' miRNA: 3'- gCGUGu---GGCa----CCUCUUGuuCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 94152 | 0.72 | 0.856115 |
Target: 5'- gGCgGCGCUGgacgguggGGGGGACGGGGACGAa -3' miRNA: 3'- gCG-UGUGGCa-------CCUCUUGUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 98040 | 0.73 | 0.848147 |
Target: 5'- gGCuCACCGUGGuuuGGCAAGGAUuGCg -3' miRNA: 3'- gCGuGUGGCACCuc-UUGUUCCUGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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