miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 265 0.68 0.977936
Target:  5'- cCGCGCG-CGcGGAc-GCGAGGACGGCg -3'
miRNA:   3'- -GCGUGUgGCaCCUcuUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 13077 0.68 0.979774
Target:  5'- cCGCGCgACCGgcgcgaagucccGGGGGACGAGGugcguuCGGCg -3'
miRNA:   3'- -GCGUG-UGGCa-----------CCUCUUGUUCCu-----GUUG- -5'
10849 3' -51.8 NC_002794.1 + 13591 0.66 0.989885
Target:  5'- gGCACgACCGUcguccggGGAGAACuccaagaacuggaaGAGGACGu- -3'
miRNA:   3'- gCGUG-UGGCA-------CCUCUUG--------------UUCCUGUug -5'
10849 3' -51.8 NC_002794.1 + 14589 0.71 0.923473
Target:  5'- aGCGgGCCGUGGcGAGCGcgccGGGCAccGCg -3'
miRNA:   3'- gCGUgUGGCACCuCUUGUu---CCUGU--UG- -5'
10849 3' -51.8 NC_002794.1 + 17993 0.7 0.928895
Target:  5'- gGC-CGCCG-GcGAGuacuACGAGGACGGCg -3'
miRNA:   3'- gCGuGUGGCaC-CUCu---UGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 19815 0.67 0.988651
Target:  5'- cCGCGCGCCGgacUGGAucaagcugcugcacGGcuACGGGGACuGCg -3'
miRNA:   3'- -GCGUGUGGC---ACCU--------------CU--UGUUCCUGuUG- -5'
10849 3' -51.8 NC_002794.1 + 21617 0.69 0.952345
Target:  5'- cCGCGCcgucGCCG-GGAGGacgACGAGGAagaaGACg -3'
miRNA:   3'- -GCGUG----UGGCaCCUCU---UGUUCCUg---UUG- -5'
10849 3' -51.8 NC_002794.1 + 32625 0.66 0.991593
Target:  5'- gGCcCGCCGacgaagaGGGGGGCGacgaccGGGGCGACg -3'
miRNA:   3'- gCGuGUGGCa------CCUCUUGU------UCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 33878 0.68 0.975468
Target:  5'- aGCGgAUCGUGGAGcuCAuGGAgCGGCa -3'
miRNA:   3'- gCGUgUGGCACCUCuuGUuCCU-GUUG- -5'
10849 3' -51.8 NC_002794.1 + 34214 0.66 0.993628
Target:  5'- cCGCAC-CUG-GGAGcGCAAGGuGCAGg -3'
miRNA:   3'- -GCGUGuGGCaCCUCuUGUUCC-UGUUg -5'
10849 3' -51.8 NC_002794.1 + 37290 0.66 0.990398
Target:  5'- gCGUACAacgacaCGUaGGGGAACGcGGGGCAGa -3'
miRNA:   3'- -GCGUGUg-----GCA-CCUCUUGU-UCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 38721 0.67 0.984242
Target:  5'- gGC-CGCCGaaaUGGGGAccucGCAcguGGACGGCa -3'
miRNA:   3'- gCGuGUGGC---ACCUCU----UGUu--CCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 40524 0.68 0.969939
Target:  5'- cCGaCGCGCCGacgGGAGA-CGAGGGggcCGGCg -3'
miRNA:   3'- -GC-GUGUGGCa--CCUCUuGUUCCU---GUUG- -5'
10849 3' -51.8 NC_002794.1 + 42481 0.66 0.994486
Target:  5'- gCGCGCGCCGgggccgagcGGAGAgugugagaaagaGCGAGaGAgAGCc -3'
miRNA:   3'- -GCGUGUGGCa--------CCUCU------------UGUUC-CUgUUG- -5'
10849 3' -51.8 NC_002794.1 + 44731 0.66 0.993628
Target:  5'- gGCcgGCGCCGccGGAGGGCuaaGACGGCg -3'
miRNA:   3'- gCG--UGUGGCa-CCUCUUGuucCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 47152 1.12 0.00632
Target:  5'- aCGCACACCGUGGAGAACAAGGACAACg -3'
miRNA:   3'- -GCGUGUGGCACCUCUUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 51808 0.66 0.994069
Target:  5'- gGCACcaacaagAUCGUGGAGGACAcgccccugaucacGGACGAg -3'
miRNA:   3'- gCGUG-------UGGCACCUCUUGUu------------CCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 52301 0.68 0.977936
Target:  5'- aCGcCugGCCGUGGAGAGuuucaucgcCAAGuuCAACu -3'
miRNA:   3'- -GC-GugUGGCACCUCUU---------GUUCcuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 53616 0.67 0.989075
Target:  5'- cCGcCGCAgCGUcGGAcGGACGAGGuCGGCc -3'
miRNA:   3'- -GC-GUGUgGCA-CCU-CUUGUUCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 54939 0.69 0.966863
Target:  5'- aGCGCgACCGUGGucAGCucGGAgAACu -3'
miRNA:   3'- gCGUG-UGGCACCucUUGuuCCUgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.