miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 55144 0.66 0.991247
Target:  5'- gCGUcgGCACCG-GGAGAcACGAgucgagcgccgagcGGGCGACu -3'
miRNA:   3'- -GCG--UGUGGCaCCUCU-UGUU--------------CCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 55258 0.67 0.988651
Target:  5'- aGgACGCCGaagagccgGGGGGcggcgguggcggcgACGAGGGCGGCg -3'
miRNA:   3'- gCgUGUGGCa-------CCUCU--------------UGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 56597 0.74 0.787177
Target:  5'- cCGC-CGCCGgccuccucaUGGAGAACu-GGACGGCg -3'
miRNA:   3'- -GCGuGUGGC---------ACCUCUUGuuCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 57094 0.71 0.899343
Target:  5'- uGCGCACCGUcaAGAACAcGGcCGACg -3'
miRNA:   3'- gCGUGUGGCAccUCUUGUuCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 58937 0.7 0.939003
Target:  5'- uGCACGCCaUGGA---CGAGGACGAg -3'
miRNA:   3'- gCGUGUGGcACCUcuuGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 70291 0.66 0.991593
Target:  5'- aGCAgGCCG-GGGGGGCccGGGCGc- -3'
miRNA:   3'- gCGUgUGGCaCCUCUUGuuCCUGUug -5'
10849 3' -51.8 NC_002794.1 + 72412 0.68 0.977936
Target:  5'- aGCACACCGccgcGGcGGAgGAGGAgcCGGCg -3'
miRNA:   3'- gCGUGUGGCa---CCuCUUgUUCCU--GUUG- -5'
10849 3' -51.8 NC_002794.1 + 79992 0.73 0.814342
Target:  5'- aGgAgGCgGaGGAGGACGAGGACGGCg -3'
miRNA:   3'- gCgUgUGgCaCCUCUUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 91073 0.71 0.917806
Target:  5'- uGUACGCCGUGGuGGGCuacGGGCu-- -3'
miRNA:   3'- gCGUGUGGCACCuCUUGuu-CCUGuug -5'
10849 3' -51.8 NC_002794.1 + 91160 0.69 0.95515
Target:  5'- uGgGCGCCGUGGAGGccuuCAAGcucccccuguacccGGCGACg -3'
miRNA:   3'- gCgUGUGGCACCUCUu---GUUC--------------CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 92439 0.7 0.939003
Target:  5'- aCGCugGCCGUGcGGGGccGCGcGGACuuCa -3'
miRNA:   3'- -GCGugUGGCAC-CUCU--UGUuCCUGuuG- -5'
10849 3' -51.8 NC_002794.1 + 93138 0.66 0.991593
Target:  5'- aCGCGCugcccaaguCCGUGGccaucggcaAGAugGAGGAguuCAACg -3'
miRNA:   3'- -GCGUGu--------GGCACC---------UCUugUUCCU---GUUG- -5'
10849 3' -51.8 NC_002794.1 + 94152 0.72 0.856115
Target:  5'- gGCgGCGCUGgacgguggGGGGGACGGGGACGAa -3'
miRNA:   3'- gCG-UGUGGCa-------CCUCUUGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 95733 0.66 0.991593
Target:  5'- cCGCAgACCGuUGGAcgGGGCugguacucgcGGGGCGGCg -3'
miRNA:   3'- -GCGUgUGGC-ACCU--CUUGu---------UCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 95825 0.66 0.995247
Target:  5'- gGCG-GCCG-GGGGAGCGGcGGCGGCg -3'
miRNA:   3'- gCGUgUGGCaCCUCUUGUUcCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 96370 0.66 0.992666
Target:  5'- aGgGCACCGUGGcgccGAGCGAguGGAUggUc -3'
miRNA:   3'- gCgUGUGGCACCu---CUUGUU--CCUGuuG- -5'
10849 3' -51.8 NC_002794.1 + 96936 0.68 0.977936
Target:  5'- aGCACGCCGUcggagucuccGGAGAcCucGGcCGACa -3'
miRNA:   3'- gCGUGUGGCA----------CCUCUuGuuCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 98040 0.73 0.848147
Target:  5'- gGCuCACCGUGGuuuGGCAAGGAUuGCg -3'
miRNA:   3'- gCGuGUGGCACCuc-UUGUUCCUGuUG- -5'
10849 3' -51.8 NC_002794.1 + 98286 0.67 0.984966
Target:  5'- gGCGCACCGgGGAGAugcugcacgagcugaGCAAGauCAACc -3'
miRNA:   3'- gCGUGUGGCaCCUCU---------------UGUUCcuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 100463 0.72 0.878742
Target:  5'- gGCGCcuucCCGguggcGGAGAACcuGGACGACg -3'
miRNA:   3'- gCGUGu---GGCa----CCUCUUGuuCCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.