Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10849 | 3' | -51.8 | NC_002794.1 | + | 101821 | 0.79 | 0.538544 |
Target: 5'- gGCGCGCCGUgcgcgaggccaugcgGGAGuGCGAGGACGAg -3' miRNA: 3'- gCGUGUGGCA---------------CCUCuUGUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 103611 | 0.66 | 0.992036 |
Target: 5'- gGCACGCgCucuUGGAGAucugcucguugcuguACGGGGACAGg -3' miRNA: 3'- gCGUGUG-Gc--ACCUCU---------------UGUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 106276 | 0.68 | 0.975468 |
Target: 5'- gCGuCGCGCCGccucGGAcGGCGAGaGACGACg -3' miRNA: 3'- -GC-GUGUGGCa---CCUcUUGUUC-CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 106364 | 0.66 | 0.991593 |
Target: 5'- gCGgGCGCCGguucgcgcGGAGGGCA--GACGGCg -3' miRNA: 3'- -GCgUGUGGCa-------CCUCUUGUucCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107028 | 0.66 | 0.993628 |
Target: 5'- cCGCgGCGCCGcUGGGGAcccccGCGucGGaGGCGGCg -3' miRNA: 3'- -GCG-UGUGGC-ACCUCU-----UGU--UC-CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107217 | 0.66 | 0.991593 |
Target: 5'- gCGC-CGCCG-GGcGGcgcgcGACGGGGGCGGCg -3' miRNA: 3'- -GCGuGUGGCaCC-UC-----UUGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107550 | 0.66 | 0.994486 |
Target: 5'- gGCGacgacCGCgGUGGGGGAgGAGGAgGAg -3' miRNA: 3'- gCGU-----GUGgCACCUCUUgUUCCUgUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107755 | 0.7 | 0.939003 |
Target: 5'- uCGCGCGCCGcUGGcuGGAGCGcgcucgcccGGcGACGACc -3' miRNA: 3'- -GCGUGUGGC-ACC--UCUUGU---------UC-CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107960 | 0.7 | 0.943691 |
Target: 5'- cCGCGCGagaaGcUGGAGAACuuuuuGGACGGCg -3' miRNA: 3'- -GCGUGUgg--C-ACCUCUUGuu---CCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 108377 | 0.68 | 0.975468 |
Target: 5'- cCGgGCGCCGgagcGGGGAGCgGAGGcuccgGCGGCg -3' miRNA: 3'- -GCgUGUGGCa---CCUCUUG-UUCC-----UGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 110055 | 0.68 | 0.975468 |
Target: 5'- uCGCGgAuCCGUcGGAGAGCGcGGAUcGCg -3' miRNA: 3'- -GCGUgU-GGCA-CCUCUUGUuCCUGuUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 113122 | 0.68 | 0.972805 |
Target: 5'- gGCGCuucuCCGUGuccGAGAGgAAGGGCGGg -3' miRNA: 3'- gCGUGu---GGCAC---CUCUUgUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 113689 | 0.66 | 0.990015 |
Target: 5'- cCGC-CACCGUcGGcagcgccagguucuGGcuCAGGGACGGCg -3' miRNA: 3'- -GCGuGUGGCA-CC--------------UCuuGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 114500 | 0.68 | 0.969939 |
Target: 5'- aCGCGCGCCGgaccgucccGGAGcgaguCGAGcGGCAGCc -3' miRNA: 3'- -GCGUGUGGCa--------CCUCuu---GUUC-CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 115960 | 0.7 | 0.943691 |
Target: 5'- cCGgGgACCGUGGGGGggagcgggACGGGGAgCGGCg -3' miRNA: 3'- -GCgUgUGGCACCUCU--------UGUUCCU-GUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 116029 | 0.68 | 0.980215 |
Target: 5'- gGCGCggggACCGgagaGGAGAGCGcagGGGGgAGCg -3' miRNA: 3'- gCGUG----UGGCa---CCUCUUGU---UCCUgUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 118148 | 0.66 | 0.995247 |
Target: 5'- gGUGCACCGUcauGGGGcuCAGGGugucguaggcgGCGACg -3' miRNA: 3'- gCGUGUGGCA---CCUCuuGUUCC-----------UGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 118986 | 0.66 | 0.993628 |
Target: 5'- aGCACGuCCGggcgcggGGAGAcgAGGGGgAACa -3' miRNA: 3'- gCGUGU-GGCa------CCUCUugUUCCUgUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 121920 | 0.69 | 0.960058 |
Target: 5'- uCGCcCGCCGcGGGGGAaGAGGcCGACg -3' miRNA: 3'- -GCGuGUGGCaCCUCUUgUUCCuGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 122569 | 0.68 | 0.969939 |
Target: 5'- aCGCGCAgCGgcugcuggGGAuGAugAAGGACGGg -3' miRNA: 3'- -GCGUGUgGCa-------CCU-CUugUUCCUGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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