miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 191849 0.66 0.994801
Target:  5'- aCGCGCaAUCGUGGucguGAAaggccggcggcggaGGGGGCGGCg -3'
miRNA:   3'- -GCGUG-UGGCACCu---CUUg-------------UUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 191656 0.66 0.990398
Target:  5'- aGCcCGCCG-GGGGAcgGCGccGGCAGCg -3'
miRNA:   3'- gCGuGUGGCaCCUCU--UGUucCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 190743 0.66 0.993628
Target:  5'- cCGC-CGCCGUcuc-GACGGGGGCGGCg -3'
miRNA:   3'- -GCGuGUGGCAccucUUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 187477 0.74 0.787177
Target:  5'- gCGCGCGCCGggccGAGGACGAGGccgcgcagGCGGCc -3'
miRNA:   3'- -GCGUGUGGCac--CUCUUGUUCC--------UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 185350 0.66 0.994486
Target:  5'- uCGCGCGCCGccgcgagcGGGccgaacgccgcGAGCGAGGcCAGCc -3'
miRNA:   3'- -GCGUGUGGCa-------CCU-----------CUUGUUCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 179946 0.76 0.698973
Target:  5'- uCGCGgGCCG-GG-GAGCGAGcGACAGCa -3'
miRNA:   3'- -GCGUgUGGCaCCuCUUGUUC-CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 176931 0.66 0.993628
Target:  5'- gGUuCAUCGUGGccgcuGAgugaaACGGGGGCAGCg -3'
miRNA:   3'- gCGuGUGGCACCu----CU-----UGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 165784 0.74 0.768335
Target:  5'- -aUACACCGUGGAGAAUugaucGGCAACg -3'
miRNA:   3'- gcGUGUGGCACCUCUUGuuc--CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 157194 0.67 0.988935
Target:  5'- uCGguCGCCGaUGGAGAcagguccGCAcGGACAc- -3'
miRNA:   3'- -GCguGUGGC-ACCUCU-------UGUuCCUGUug -5'
10849 3' -51.8 NC_002794.1 + 155326 0.67 0.986005
Target:  5'- aGCGUAUCGUGGGGAACAacAGGuuguGCu -3'
miRNA:   3'- gCGUGUGGCACCUCUUGU--UCCugu-UG- -5'
10849 3' -51.8 NC_002794.1 + 153010 0.66 0.990398
Target:  5'- aGCACGgCGgacUGGGcGACGGGGACGGg -3'
miRNA:   3'- gCGUGUgGC---ACCUcUUGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 148731 0.68 0.975468
Target:  5'- uGCGCcuacCCGUGGuucGAACGAGacuuuGACGACg -3'
miRNA:   3'- gCGUGu---GGCACCu--CUUGUUC-----CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 148063 0.67 0.987459
Target:  5'- cCGCGCucugggaGCCG-GGAguggccucGAGCGAGGAgCAGCu -3'
miRNA:   3'- -GCGUG-------UGGCaCCU--------CUUGUUCCU-GUUG- -5'
10849 3' -51.8 NC_002794.1 + 144612 0.72 0.892709
Target:  5'- aGCAgACgGUGGAGGAgAuGGGCAAg -3'
miRNA:   3'- gCGUgUGgCACCUCUUgUuCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 143588 0.66 0.995247
Target:  5'- gGCgGCGCUGUGGucGAACAccGGcACGACg -3'
miRNA:   3'- gCG-UGUGGCACCu-CUUGUu-CC-UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 142993 0.67 0.984242
Target:  5'- uGCcCGCCGUGGccaGGAACccGGuCAGCg -3'
miRNA:   3'- gCGuGUGGCACC---UCUUGuuCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 142591 0.67 0.984057
Target:  5'- gGCGCGCCcUGGGGGAUGAcgagcuggcgcacGGGCGAg -3'
miRNA:   3'- gCGUGUGGcACCUCUUGUU-------------CCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 142472 0.67 0.987613
Target:  5'- gCGCcgGCACCGUGGAcgcgugcGGCGccGGCAGCg -3'
miRNA:   3'- -GCG--UGUGGCACCUc------UUGUucCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 138309 0.67 0.989075
Target:  5'- cCGCACGCUGUcGGGGAgGAGGuCuuCg -3'
miRNA:   3'- -GCGUGUGGCAcCUCUUgUUCCuGuuG- -5'
10849 3' -51.8 NC_002794.1 + 136911 0.67 0.989075
Target:  5'- uCGUACACCGUcaucgGGAGcccCGAGuuGACGGCg -3'
miRNA:   3'- -GCGUGUGGCA-----CCUCuu-GUUC--CUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.