miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 136125 0.66 0.994486
Target:  5'- gCGgGCGaaGUcgaagaGGAGGGCGAGGACGGg -3'
miRNA:   3'- -GCgUGUggCA------CCUCUUGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 134163 0.66 0.991593
Target:  5'- uGCugGCCGUGGcc-GCGcGGAUGGCc -3'
miRNA:   3'- gCGugUGGCACCucuUGUuCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 132312 0.67 0.987613
Target:  5'- -cCACAgCGUGGuGAuCGGGGACAu- -3'
miRNA:   3'- gcGUGUgGCACCuCUuGUUCCUGUug -5'
10849 3' -51.8 NC_002794.1 + 132189 0.66 0.994486
Target:  5'- aCGCu--CCGacUGGGGGACGGGuGCGACg -3'
miRNA:   3'- -GCGuguGGC--ACCUCUUGUUCcUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 131171 0.66 0.991479
Target:  5'- gGCGC-CCGUcucgagccGGAGAcaGCAcggcgccGGGGCGGCg -3'
miRNA:   3'- gCGUGuGGCA--------CCUCU--UGU-------UCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 129279 0.66 0.993628
Target:  5'- aGCGgGCCGgucucucGGuGGuaccGCGAGGAUAGCa -3'
miRNA:   3'- gCGUgUGGCa------CCuCU----UGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 125428 0.71 0.905739
Target:  5'- gCGCACGUCGcGaaucGGAACAAGGGCGACg -3'
miRNA:   3'- -GCGUGUGGCaCc---UCUUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 122569 0.68 0.969939
Target:  5'- aCGCGCAgCGgcugcuggGGAuGAugAAGGACGGg -3'
miRNA:   3'- -GCGUGUgGCa-------CCU-CUugUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 121920 0.69 0.960058
Target:  5'- uCGCcCGCCGcGGGGGAaGAGGcCGACg -3'
miRNA:   3'- -GCGuGUGGCaCCUCUUgUUCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 118986 0.66 0.993628
Target:  5'- aGCACGuCCGggcgcggGGAGAcgAGGGGgAACa -3'
miRNA:   3'- gCGUGU-GGCa------CCUCUugUUCCUgUUG- -5'
10849 3' -51.8 NC_002794.1 + 118148 0.66 0.995247
Target:  5'- gGUGCACCGUcauGGGGcuCAGGGugucguaggcgGCGACg -3'
miRNA:   3'- gCGUGUGGCA---CCUCuuGUUCC-----------UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 116029 0.68 0.980215
Target:  5'- gGCGCggggACCGgagaGGAGAGCGcagGGGGgAGCg -3'
miRNA:   3'- gCGUG----UGGCa---CCUCUUGU---UCCUgUUG- -5'
10849 3' -51.8 NC_002794.1 + 115960 0.7 0.943691
Target:  5'- cCGgGgACCGUGGGGGggagcgggACGGGGAgCGGCg -3'
miRNA:   3'- -GCgUgUGGCACCUCU--------UGUUCCU-GUUG- -5'
10849 3' -51.8 NC_002794.1 + 114500 0.68 0.969939
Target:  5'- aCGCGCGCCGgaccgucccGGAGcgaguCGAGcGGCAGCc -3'
miRNA:   3'- -GCGUGUGGCa--------CCUCuu---GUUC-CUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 113689 0.66 0.990015
Target:  5'- cCGC-CACCGUcGGcagcgccagguucuGGcuCAGGGACGGCg -3'
miRNA:   3'- -GCGuGUGGCA-CC--------------UCuuGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 113122 0.68 0.972805
Target:  5'- gGCGCuucuCCGUGuccGAGAGgAAGGGCGGg -3'
miRNA:   3'- gCGUGu---GGCAC---CUCUUgUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 110055 0.68 0.975468
Target:  5'- uCGCGgAuCCGUcGGAGAGCGcGGAUcGCg -3'
miRNA:   3'- -GCGUgU-GGCA-CCUCUUGUuCCUGuUG- -5'
10849 3' -51.8 NC_002794.1 + 108377 0.68 0.975468
Target:  5'- cCGgGCGCCGgagcGGGGAGCgGAGGcuccgGCGGCg -3'
miRNA:   3'- -GCgUGUGGCa---CCUCUUG-UUCC-----UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 107960 0.7 0.943691
Target:  5'- cCGCGCGagaaGcUGGAGAACuuuuuGGACGGCg -3'
miRNA:   3'- -GCGUGUgg--C-ACCUCUUGuu---CCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 107755 0.7 0.939003
Target:  5'- uCGCGCGCCGcUGGcuGGAGCGcgcucgcccGGcGACGACc -3'
miRNA:   3'- -GCGUGUGGC-ACC--UCUUGU---------UC-CUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.