Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10849 | 3' | -51.8 | NC_002794.1 | + | 47152 | 1.12 | 0.00632 |
Target: 5'- aCGCACACCGUGGAGAACAAGGACAACg -3' miRNA: 3'- -GCGUGUGGCACCUCUUGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 176931 | 0.66 | 0.993628 |
Target: 5'- gGUuCAUCGUGGccgcuGAgugaaACGGGGGCAGCg -3' miRNA: 3'- gCGuGUGGCACCu----CU-----UGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 44731 | 0.66 | 0.993628 |
Target: 5'- gGCcgGCGCCGccGGAGGGCuaaGACGGCg -3' miRNA: 3'- gCG--UGUGGCa-CCUCUUGuucCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 129279 | 0.66 | 0.993628 |
Target: 5'- aGCGgGCCGgucucucGGuGGuaccGCGAGGAUAGCa -3' miRNA: 3'- gCGUgUGGCa------CCuCU----UGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 96370 | 0.66 | 0.992666 |
Target: 5'- aGgGCACCGUGGcgccGAGCGAguGGAUggUc -3' miRNA: 3'- gCgUGUGGCACCu---CUUGUU--CCUGuuG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 34214 | 0.66 | 0.993628 |
Target: 5'- cCGCAC-CUG-GGAGcGCAAGGuGCAGg -3' miRNA: 3'- -GCGUGuGGCaCCUCuUGUUCC-UGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 118986 | 0.66 | 0.993628 |
Target: 5'- aGCACGuCCGggcgcggGGAGAcgAGGGGgAACa -3' miRNA: 3'- gCGUGU-GGCa------CCUCUugUUCCUgUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 103611 | 0.66 | 0.992036 |
Target: 5'- gGCACGCgCucuUGGAGAucugcucguugcuguACGGGGACAGg -3' miRNA: 3'- gCGUGUG-Gc--ACCUCU---------------UGUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 95733 | 0.66 | 0.991593 |
Target: 5'- cCGCAgACCGuUGGAcgGGGCugguacucgcGGGGCGGCg -3' miRNA: 3'- -GCGUgUGGC-ACCU--CUUGu---------UCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107028 | 0.66 | 0.993628 |
Target: 5'- cCGCgGCGCCGcUGGGGAcccccGCGucGGaGGCGGCg -3' miRNA: 3'- -GCG-UGUGGC-ACCUCU-----UGU--UC-CUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 190743 | 0.66 | 0.993628 |
Target: 5'- cCGC-CGCCGUcuc-GACGGGGGCGGCg -3' miRNA: 3'- -GCGuGUGGCAccucUUGUUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 51808 | 0.66 | 0.994069 |
Target: 5'- gGCACcaacaagAUCGUGGAGGACAcgccccugaucacGGACGAg -3' miRNA: 3'- gCGUG-------UGGCACCUCUUGUu------------CCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 118148 | 0.66 | 0.995247 |
Target: 5'- gGUGCACCGUcauGGGGcuCAGGGugucguaggcgGCGACg -3' miRNA: 3'- gCGUGUGGCA---CCUCuuGUUCC-----------UGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 143588 | 0.66 | 0.995247 |
Target: 5'- gGCgGCGCUGUGGucGAACAccGGcACGACg -3' miRNA: 3'- gCG-UGUGGCACCu-CUUGUu-CC-UGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 191849 | 0.66 | 0.994801 |
Target: 5'- aCGCGCaAUCGUGGucguGAAaggccggcggcggaGGGGGCGGCg -3' miRNA: 3'- -GCGUG-UGGCACCu---CUUg-------------UUCCUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 132189 | 0.66 | 0.994486 |
Target: 5'- aCGCu--CCGacUGGGGGACGGGuGCGACg -3' miRNA: 3'- -GCGuguGGC--ACCUCUUGUUCcUGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 185350 | 0.66 | 0.994486 |
Target: 5'- uCGCGCGCCGccgcgagcGGGccgaacgccgcGAGCGAGGcCAGCc -3' miRNA: 3'- -GCGUGUGGCa-------CCU-----------CUUGUUCCuGUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 42481 | 0.66 | 0.994486 |
Target: 5'- gCGCGCGCCGgggccgagcGGAGAgugugagaaagaGCGAGaGAgAGCc -3' miRNA: 3'- -GCGUGUGGCa--------CCUCU------------UGUUC-CUgUUG- -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 136125 | 0.66 | 0.994486 |
Target: 5'- gCGgGCGaaGUcgaagaGGAGGGCGAGGACGGg -3' miRNA: 3'- -GCgUGUggCA------CCUCUUGUUCCUGUUg -5' |
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10849 | 3' | -51.8 | NC_002794.1 | + | 107550 | 0.66 | 0.994486 |
Target: 5'- gGCGacgacCGCgGUGGGGGAgGAGGAgGAg -3' miRNA: 3'- gCGU-----GUGgCACCUCUUgUUCCUgUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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