miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 3' -51.8 NC_002794.1 + 185350 0.66 0.994486
Target:  5'- uCGCGCGCCGccgcgagcGGGccgaacgccgcGAGCGAGGcCAGCc -3'
miRNA:   3'- -GCGUGUGGCa-------CCU-----------CUUGUUCCuGUUG- -5'
10849 3' -51.8 NC_002794.1 + 132189 0.66 0.994486
Target:  5'- aCGCu--CCGacUGGGGGACGGGuGCGACg -3'
miRNA:   3'- -GCGuguGGC--ACCUCUUGUUCcUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 191849 0.66 0.994801
Target:  5'- aCGCGCaAUCGUGGucguGAAaggccggcggcggaGGGGGCGGCg -3'
miRNA:   3'- -GCGUG-UGGCACCu---CUUg-------------UUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 143588 0.66 0.995247
Target:  5'- gGCgGCGCUGUGGucGAACAccGGcACGACg -3'
miRNA:   3'- gCG-UGUGGCACCu-CUUGUu-CC-UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 118148 0.66 0.995247
Target:  5'- gGUGCACCGUcauGGGGcuCAGGGugucguaggcgGCGACg -3'
miRNA:   3'- gCGUGUGGCA---CCUCuuGUUCC-----------UGUUG- -5'
10849 3' -51.8 NC_002794.1 + 129279 0.66 0.993628
Target:  5'- aGCGgGCCGgucucucGGuGGuaccGCGAGGAUAGCa -3'
miRNA:   3'- gCGUgUGGCa------CCuCU----UGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 96370 0.66 0.992666
Target:  5'- aGgGCACCGUGGcgccGAGCGAguGGAUggUc -3'
miRNA:   3'- gCgUGUGGCACCu---CUUGUU--CCUGuuG- -5'
10849 3' -51.8 NC_002794.1 + 191656 0.66 0.990398
Target:  5'- aGCcCGCCG-GGGGAcgGCGccGGCAGCg -3'
miRNA:   3'- gCGuGUGGCaCCUCU--UGUucCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 55144 0.66 0.991247
Target:  5'- gCGUcgGCACCG-GGAGAcACGAgucgagcgccgagcGGGCGACu -3'
miRNA:   3'- -GCG--UGUGGCaCCUCU-UGUU--------------CCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 32625 0.66 0.991593
Target:  5'- gGCcCGCCGacgaagaGGGGGGCGacgaccGGGGCGACg -3'
miRNA:   3'- gCGuGUGGCa------CCUCUUGU------UCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 131171 0.66 0.991479
Target:  5'- gGCGC-CCGUcucgagccGGAGAcaGCAcggcgccGGGGCGGCg -3'
miRNA:   3'- gCGUGuGGCA--------CCUCU--UGU-------UCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 134163 0.66 0.991593
Target:  5'- uGCugGCCGUGGcc-GCGcGGAUGGCc -3'
miRNA:   3'- gCGugUGGCACCucuUGUuCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 70291 0.66 0.991593
Target:  5'- aGCAgGCCG-GGGGGGCccGGGCGc- -3'
miRNA:   3'- gCGUgUGGCaCCUCUUGuuCCUGUug -5'
10849 3' -51.8 NC_002794.1 + 107217 0.66 0.991593
Target:  5'- gCGC-CGCCG-GGcGGcgcgcGACGGGGGCGGCg -3'
miRNA:   3'- -GCGuGUGGCaCC-UC-----UUGUUCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 106364 0.66 0.991593
Target:  5'- gCGgGCGCCGguucgcgcGGAGGGCA--GACGGCg -3'
miRNA:   3'- -GCgUGUGGCa-------CCUCUUGUucCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 93138 0.66 0.991593
Target:  5'- aCGCGCugcccaaguCCGUGGccaucggcaAGAugGAGGAguuCAACg -3'
miRNA:   3'- -GCGUGu--------GGCACC---------UCUugUUCCU---GUUG- -5'
10849 3' -51.8 NC_002794.1 + 95733 0.66 0.991593
Target:  5'- cCGCAgACCGuUGGAcgGGGCugguacucgcGGGGCGGCg -3'
miRNA:   3'- -GCGUgUGGC-ACCU--CUUGu---------UCCUGUUG- -5'
10849 3' -51.8 NC_002794.1 + 103611 0.66 0.992036
Target:  5'- gGCACGCgCucuUGGAGAucugcucguugcuguACGGGGACAGg -3'
miRNA:   3'- gCGUGUG-Gc--ACCUCU---------------UGUUCCUGUUg -5'
10849 3' -51.8 NC_002794.1 + 118986 0.66 0.993628
Target:  5'- aGCACGuCCGggcgcggGGAGAcgAGGGGgAACa -3'
miRNA:   3'- gCGUGU-GGCa------CCUCUugUUCCUgUUG- -5'
10849 3' -51.8 NC_002794.1 + 34214 0.66 0.993628
Target:  5'- cCGCAC-CUG-GGAGcGCAAGGuGCAGg -3'
miRNA:   3'- -GCGUGuGGCaCCUCuUGUUCC-UGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.