miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 195254 0.66 0.934368
Target:  5'- cCGACCACCCCG--GCgGGGAcuGCAgCGa -3'
miRNA:   3'- -GCUGGUGGGGUagCGgUUCU--CGU-GCc -5'
10849 5' -57.1 NC_002794.1 + 13328 0.66 0.934368
Target:  5'- aCGACCGCUCCcccgGUCGGGGGUGgCGGc -3'
miRNA:   3'- -GCUGGUGGGGuag-CGGUUCUCGU-GCC- -5'
10849 5' -57.1 NC_002794.1 + 83014 0.66 0.934368
Target:  5'- cCGAUCugcGCCCCGUcccggCGCCGGGcGGCACc- -3'
miRNA:   3'- -GCUGG---UGGGGUA-----GCGGUUC-UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 285 0.66 0.934368
Target:  5'- aCGGCgGCCCUGgcgCGCCGAacGC-CGGg -3'
miRNA:   3'- -GCUGgUGGGGUa--GCGGUUcuCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 190482 0.66 0.934368
Target:  5'- aCGGgUGCCCCA-CGCCGcccaGGAGauacCACGGc -3'
miRNA:   3'- -GCUgGUGGGGUaGCGGU----UCUC----GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 182125 0.66 0.934368
Target:  5'- -cGCCAgCCgAaccgCGCCAAGucgucGCACGGg -3'
miRNA:   3'- gcUGGUgGGgUa---GCGGUUCu----CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 141128 0.66 0.934368
Target:  5'- -cGCCACCCggcuccgaGUCGCCGA-AGCcgGCGGa -3'
miRNA:   3'- gcUGGUGGGg-------UAGCGGUUcUCG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 123980 0.66 0.931446
Target:  5'- uCGACCACgCCGUggCGCCGGucaucuacgugaagcGGGCggccGCGGa -3'
miRNA:   3'- -GCUGGUGgGGUA--GCGGUU---------------CUCG----UGCC- -5'
10849 5' -57.1 NC_002794.1 + 53905 0.66 0.929453
Target:  5'- gCGGCguCCUCGUCGCCGucGGcGGCGCc- -3'
miRNA:   3'- -GCUGguGGGGUAGCGGU--UC-UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 134697 0.66 0.929453
Target:  5'- uCGACCGCCUCuggggGCC-GGAGuUGCGGg -3'
miRNA:   3'- -GCUGGUGGGGuag--CGGuUCUC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 121964 0.66 0.929453
Target:  5'- gGAgCGCUCCGUgcggcucgguccCGCC--GAGCGCGGc -3'
miRNA:   3'- gCUgGUGGGGUA------------GCGGuuCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 53786 0.66 0.929453
Target:  5'- gCGACgCGCCCgGcggguuucUCGgCGGGAGCcucgGCGGg -3'
miRNA:   3'- -GCUG-GUGGGgU--------AGCgGUUCUCG----UGCC- -5'
10849 5' -57.1 NC_002794.1 + 195307 0.66 0.929453
Target:  5'- aCGcACCGCCgCGUCGCCuucgccGAGUAgUGGc -3'
miRNA:   3'- -GC-UGGUGGgGUAGCGGuu----CUCGU-GCC- -5'
10849 5' -57.1 NC_002794.1 + 137059 0.66 0.929453
Target:  5'- gGAUCugCCCGUCGgCGGGcucuucGCGCGc -3'
miRNA:   3'- gCUGGugGGGUAGCgGUUCu-----CGUGCc -5'
10849 5' -57.1 NC_002794.1 + 103847 0.66 0.928949
Target:  5'- uGACCACCgagcgggCCGcCGCCGacgAGAGCgACGa -3'
miRNA:   3'- gCUGGUGG-------GGUaGCGGU---UCUCG-UGCc -5'
10849 5' -57.1 NC_002794.1 + 82789 0.66 0.928949
Target:  5'- cCGACCGCCgcguccacgcgcgCCGcgacccgcggcUCGCuCGAGAgacGCACGGc -3'
miRNA:   3'- -GCUGGUGG-------------GGU-----------AGCG-GUUCU---CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 90161 0.66 0.927934
Target:  5'- gGuCCGgguCCCCGUgaagccuccgaggaCGCgCGGGGGCACGGu -3'
miRNA:   3'- gCuGGU---GGGGUA--------------GCG-GUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 69076 0.66 0.927934
Target:  5'- cCGGCCGCCCUccuccGUCcucaCCGAGAGUcgacaucgcgugacACGGc -3'
miRNA:   3'- -GCUGGUGGGG-----UAGc---GGUUCUCG--------------UGCC- -5'
10849 5' -57.1 NC_002794.1 + 112180 0.66 0.926396
Target:  5'- gCGGCCAgCagguugucgagguaCGUCuGCCcguGGAGCACGGc -3'
miRNA:   3'- -GCUGGUgGg-------------GUAG-CGGu--UCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 79116 0.66 0.924314
Target:  5'- aCGGCCGuCUUCuUCGCCAccGAGUACGa -3'
miRNA:   3'- -GCUGGU-GGGGuAGCGGUu-CUCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.