miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 41675 0.66 0.924314
Target:  5'- gGGCCGCCgCAggagCGCCcGGAccGC-CGGa -3'
miRNA:   3'- gCUGGUGGgGUa---GCGGuUCU--CGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 79116 0.66 0.924314
Target:  5'- aCGGCCGuCUUCuUCGCCAccGAGUACGa -3'
miRNA:   3'- -GCUGGU-GGGGuAGCGGUu-CUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 112180 0.66 0.926396
Target:  5'- gCGGCCAgCagguugucgagguaCGUCuGCCcguGGAGCACGGc -3'
miRNA:   3'- -GCUGGUgGg-------------GUAG-CGGu--UCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 53197 0.66 0.924314
Target:  5'- cCGAgCCACCCggacucguCGUCGUCGAGcGGCgaaACGGu -3'
miRNA:   3'- -GCU-GGUGGG--------GUAGCGGUUC-UCG---UGCC- -5'
10849 5' -57.1 NC_002794.1 + 69076 0.66 0.927934
Target:  5'- cCGGCCGCCCUccuccGUCcucaCCGAGAGUcgacaucgcgugacACGGc -3'
miRNA:   3'- -GCUGGUGGGG-----UAGc---GGUUCUCG--------------UGCC- -5'
10849 5' -57.1 NC_002794.1 + 103847 0.66 0.928949
Target:  5'- uGACCACCgagcgggCCGcCGCCGacgAGAGCgACGa -3'
miRNA:   3'- gCUGGUGG-------GGUaGCGGU---UCUCG-UGCc -5'
10849 5' -57.1 NC_002794.1 + 82789 0.66 0.928949
Target:  5'- cCGACCGCCgcguccacgcgcgCCGcgacccgcggcUCGCuCGAGAgacGCACGGc -3'
miRNA:   3'- -GCUGGUGG-------------GGU-----------AGCG-GUUCU---CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 90161 0.66 0.927934
Target:  5'- gGuCCGgguCCCCGUgaagccuccgaggaCGCgCGGGGGCACGGu -3'
miRNA:   3'- gCuGGU---GGGGUA--------------GCG-GUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 53905 0.66 0.929453
Target:  5'- gCGGCguCCUCGUCGCCGucGGcGGCGCc- -3'
miRNA:   3'- -GCUGguGGGGUAGCGGU--UC-UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 183527 0.67 0.895294
Target:  5'- gCGGCCgugcgcGCCCCGUcCGCCcGGGGaCACu- -3'
miRNA:   3'- -GCUGG------UGGGGUA-GCGGuUCUC-GUGcc -5'
10849 5' -57.1 NC_002794.1 + 153281 0.67 0.895294
Target:  5'- -cGCCGaCCCGUCGcCCGAGAcGCAggcCGGg -3'
miRNA:   3'- gcUGGUgGGGUAGC-GGUUCU-CGU---GCC- -5'
10849 5' -57.1 NC_002794.1 + 91487 0.67 0.897817
Target:  5'- gCGACCagcuguugcugugcgACgCCAUCGCCugcGAGCugGc -3'
miRNA:   3'- -GCUGG---------------UGgGGUAGCGGuu-CUCGugCc -5'
10849 5' -57.1 NC_002794.1 + 146335 0.67 0.895294
Target:  5'- gGAUUcgACCCCGUCGUCGAucGCgGCGGc -3'
miRNA:   3'- gCUGG--UGGGGUAGCGGUUcuCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 130 0.67 0.901537
Target:  5'- cCGACCggaGCCCgGgacCGCCGcaGGGGCGCa- -3'
miRNA:   3'- -GCUGG---UGGGgUa--GCGGU--UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 179197 0.67 0.901537
Target:  5'- aGGCaCGCCCCG--GCCGGcGGCACGa -3'
miRNA:   3'- gCUG-GUGGGGUagCGGUUcUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 185387 0.67 0.901537
Target:  5'- aGGCCAgCCagaaGaCGAGGGCGCGGg -3'
miRNA:   3'- gCUGGUgGGguagCgGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 181753 0.67 0.901537
Target:  5'- cCGGCCAgCCCGcugaCGCCGAuGGCGCc- -3'
miRNA:   3'- -GCUGGUgGGGUa---GCGGUUcUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 149719 0.67 0.901537
Target:  5'- gGGCCGCCugCC-UCGCUAcggcgugccgguGGAGCgGCGGg -3'
miRNA:   3'- gCUGGUGG--GGuAGCGGU------------UCUCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 14872 0.67 0.901537
Target:  5'- -aGCCGCCCgGuUCGCCGcGAGC-CGa -3'
miRNA:   3'- gcUGGUGGGgU-AGCGGUuCUCGuGCc -5'
10849 5' -57.1 NC_002794.1 + 80856 0.67 0.895294
Target:  5'- -cACCuACCCCGUCuacuucuUCAAGAGCGCGu -3'
miRNA:   3'- gcUGG-UGGGGUAGc------GGUUCUCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.