miRNA display CGI


Results 61 - 80 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 70882 0.67 0.882169
Target:  5'- gCGGCgGCUCCucgagCGCCAGgucgguGAGCACGu -3'
miRNA:   3'- -GCUGgUGGGGua---GCGGUU------CUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 185552 0.67 0.882169
Target:  5'- cCGGCCgcgcGCCCCGcccUGCCGcggcAGGGCGCGcGg -3'
miRNA:   3'- -GCUGG----UGGGGUa--GCGGU----UCUCGUGC-C- -5'
10849 5' -57.1 NC_002794.1 + 51414 0.67 0.882169
Target:  5'- gCGcACC-CCCCGUCGCUcuuccccgcAGAGCauccGCGGa -3'
miRNA:   3'- -GC-UGGuGGGGUAGCGGu--------UCUCG----UGCC- -5'
10849 5' -57.1 NC_002794.1 + 111861 0.67 0.875294
Target:  5'- -cGCCACCgCCAggGCCuuguAGcGCGCGGu -3'
miRNA:   3'- gcUGGUGG-GGUagCGGu---UCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 4024 0.67 0.895294
Target:  5'- aGcACCGCCCCAUC-CCGAGcgaccGGCAUc- -3'
miRNA:   3'- gC-UGGUGGGGUAGcGGUUC-----UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 185933 0.67 0.888837
Target:  5'- cCGGCCACCC----GCCAGGcuCGCGGc -3'
miRNA:   3'- -GCUGGUGGGguagCGGUUCucGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 14872 0.67 0.901537
Target:  5'- -aGCCGCCCgGuUCGCCGcGAGC-CGa -3'
miRNA:   3'- gcUGGUGGGgU-AGCGGUuCUCGuGCc -5'
10849 5' -57.1 NC_002794.1 + 149719 0.67 0.901537
Target:  5'- gGGCCGCCugCC-UCGCUAcggcgugccgguGGAGCgGCGGg -3'
miRNA:   3'- gCUGGUGG--GGuAGCGGU------------UCUCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 181753 0.67 0.901537
Target:  5'- cCGGCCAgCCCGcugaCGCCGAuGGCGCc- -3'
miRNA:   3'- -GCUGGUgGGGUa---GCGGUUcUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 185387 0.67 0.901537
Target:  5'- aGGCCAgCCagaaGaCGAGGGCGCGGg -3'
miRNA:   3'- gCUGGUgGGguagCgGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 179197 0.67 0.901537
Target:  5'- aGGCaCGCCCCG--GCCGGcGGCACGa -3'
miRNA:   3'- gCUG-GUGGGGUagCGGUUcUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 130 0.67 0.901537
Target:  5'- cCGACCggaGCCCgGgacCGCCGcaGGGGCGCa- -3'
miRNA:   3'- -GCUGG---UGGGgUa--GCGGU--UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 183527 0.67 0.895294
Target:  5'- gCGGCCgugcgcGCCCCGUcCGCCcGGGGaCACu- -3'
miRNA:   3'- -GCUGG------UGGGGUA-GCGGuUCUC-GUGcc -5'
10849 5' -57.1 NC_002794.1 + 153281 0.67 0.895294
Target:  5'- -cGCCGaCCCGUCGcCCGAGAcGCAggcCGGg -3'
miRNA:   3'- gcUGGUgGGGUAGC-GGUUCU-CGU---GCC- -5'
10849 5' -57.1 NC_002794.1 + 91487 0.67 0.897817
Target:  5'- gCGACCagcuguugcugugcgACgCCAUCGCCugcGAGCugGc -3'
miRNA:   3'- -GCUGG---------------UGgGGUAGCGGuu-CUCGugCc -5'
10849 5' -57.1 NC_002794.1 + 146335 0.67 0.895294
Target:  5'- gGAUUcgACCCCGUCGUCGAucGCgGCGGc -3'
miRNA:   3'- gCUGG--UGGGGUAGCGGUUcuCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 80856 0.67 0.895294
Target:  5'- -cACCuACCCCGUCuacuucuUCAAGAGCGCGu -3'
miRNA:   3'- gcUGG-UGGGGUAGc------GGUUCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 44587 0.67 0.895294
Target:  5'- cCGAgCCACCgCCGccuucuugggCGCCgAGGGGCACGu -3'
miRNA:   3'- -GCU-GGUGG-GGUa---------GCGG-UUCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 147145 0.67 0.895294
Target:  5'- aGACgGCCCCGggGCCGcgAGGGCcaGCuGGa -3'
miRNA:   3'- gCUGgUGGGGUagCGGU--UCUCG--UG-CC- -5'
10849 5' -57.1 NC_002794.1 + 117026 0.67 0.888837
Target:  5'- cCGcGCCACCCCGgguccgacaGCaCGAG-GUACGGg -3'
miRNA:   3'- -GC-UGGUGGGGUag-------CG-GUUCuCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.