miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 114039 0.71 0.697817
Target:  5'- gCGGCCGCCCguaGUCGCCGcgcaccagcuccguGAGCucGCGGu -3'
miRNA:   3'- -GCUGGUGGGg--UAGCGGUu-------------CUCG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 180684 0.71 0.713296
Target:  5'- cCGGCCGCuCCCggCGCCcGGcGgGCGGa -3'
miRNA:   3'- -GCUGGUG-GGGuaGCGGuUCuCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 110276 0.71 0.703639
Target:  5'- aCGGCgGCCgCCGUCcucgggcCCGAGAGcCGCGGg -3'
miRNA:   3'- -GCUGgUGG-GGUAGc------GGUUCUC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 77954 0.71 0.713296
Target:  5'- gCGAUCGCCgCCGUCGCC--GAGC-CGa -3'
miRNA:   3'- -GCUGGUGG-GGUAGCGGuuCUCGuGCc -5'
10849 5' -57.1 NC_002794.1 + 192237 0.71 0.703639
Target:  5'- uCGG-CGCUgCCGUCGCCGAcGGCGCGGu -3'
miRNA:   3'- -GCUgGUGG-GGUAGCGGUUcUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 90880 0.71 0.674362
Target:  5'- cCGGCCGCCuucguguuCCAUaaCGCCGAGGccaucgugucccGCACGGa -3'
miRNA:   3'- -GCUGGUGG--------GGUA--GCGGUUCU------------CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 132982 0.71 0.703639
Target:  5'- uGACCA-CCgGUCGCCGAGcGUACGu -3'
miRNA:   3'- gCUGGUgGGgUAGCGGUUCuCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 181598 0.71 0.700731
Target:  5'- gCGACCgggucGCCCCGUUGCCGcaucucgcacguguAGGGCGgagccCGGg -3'
miRNA:   3'- -GCUGG-----UGGGGUAGCGGU--------------UCUCGU-----GCC- -5'
10849 5' -57.1 NC_002794.1 + 191705 0.71 0.684164
Target:  5'- gGACCACCUCcucGUCGuCCGAGcGGCccACGGa -3'
miRNA:   3'- gCUGGUGGGG---UAGC-GGUUC-UCG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 22550 0.71 0.693925
Target:  5'- gGACCGuCCgCCAcCGCCGAcacGGCACGGc -3'
miRNA:   3'- gCUGGU-GG-GGUaGCGGUUc--UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 51369 0.71 0.713296
Target:  5'- gCGGCCGCCCCGUCcgGCCGGcgacaGGCGCc- -3'
miRNA:   3'- -GCUGGUGGGGUAG--CGGUUc----UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 44344 0.71 0.713296
Target:  5'- aGACgGCgCCGgcgaGaCCGAGAGCGCGGc -3'
miRNA:   3'- gCUGgUGgGGUag--C-GGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 18733 0.71 0.703639
Target:  5'- aCGAgCCGCCCCAaCGCCAcGAcgGCcgGCGGc -3'
miRNA:   3'- -GCU-GGUGGGGUaGCGGUuCU--CG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 103554 0.71 0.663543
Target:  5'- aGGCCACCauggcguccgacgCCGUgGCCGAcGAGCAgCGGu -3'
miRNA:   3'- gCUGGUGG-------------GGUAgCGGUU-CUCGU-GCC- -5'
10849 5' -57.1 NC_002794.1 + 10296 0.71 0.684164
Target:  5'- aGACgACCCCGUCGgCGAGAGacuccgACGa -3'
miRNA:   3'- gCUGgUGGGGUAGCgGUUCUCg-----UGCc -5'
10849 5' -57.1 NC_002794.1 + 141997 0.71 0.692951
Target:  5'- cCGACCGCCCCAcguuguucaagUUGCCG-GAGgugcuucgccuguCGCGGg -3'
miRNA:   3'- -GCUGGUGGGGU-----------AGCGGUuCUC-------------GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 242 0.71 0.693925
Target:  5'- aCGAaacCCACCCCGgacugcCGCCGcGcGCGCGGa -3'
miRNA:   3'- -GCU---GGUGGGGUa-----GCGGUuCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 53982 0.71 0.712333
Target:  5'- cCGGCUGCCCCG-CGCCAgcgucuccagcAGcucccgcAGCACGGc -3'
miRNA:   3'- -GCUGGUGGGGUaGCGGU-----------UC-------UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 91367 0.7 0.741848
Target:  5'- cCGAgCACCUgAUCGaCGAGGGCAUGa -3'
miRNA:   3'- -GCUgGUGGGgUAGCgGUUCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 45893 0.7 0.732409
Target:  5'- cCGACCgaGCCCCGccCGCCGccGGCACcGGg -3'
miRNA:   3'- -GCUGG--UGGGGUa-GCGGUucUCGUG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.