miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 47189 1.09 0.003284
Target:  5'- uCGACCACCCCAUCGCCAAGAGCACGGc -3'
miRNA:   3'- -GCUGGUGGGGUAGCGGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 59782 0.82 0.186015
Target:  5'- -aACCACCCCAUCGUCAccaaggaGGAGCGCGa -3'
miRNA:   3'- gcUGGUGGGGUAGCGGU-------UCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 121412 0.79 0.278113
Target:  5'- gGACCGCgaCCGUCGCCGGGAcCGCGGc -3'
miRNA:   3'- gCUGGUGg-GGUAGCGGUUCUcGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 149234 0.78 0.325202
Target:  5'- -cGCCGCCgCCGUCGCCGGGGuCGCGGc -3'
miRNA:   3'- gcUGGUGG-GGUAGCGGUUCUcGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 21615 0.77 0.370085
Target:  5'- -cACCGCgCCGUCGCCGGGAGgACGa -3'
miRNA:   3'- gcUGGUGgGGUAGCGGUUCUCgUGCc -5'
10849 5' -57.1 NC_002794.1 + 127479 0.77 0.394062
Target:  5'- gCGACCACCgCCGcucugCGCCGggaaaugcucaGGAGCugGGg -3'
miRNA:   3'- -GCUGGUGG-GGUa----GCGGU-----------UCUCGugCC- -5'
10849 5' -57.1 NC_002794.1 + 14212 0.76 0.405591
Target:  5'- uGGCCGCCCCAaCGCCAcccgccgacgacagaGGAG-ACGGa -3'
miRNA:   3'- gCUGGUGGGGUaGCGGU---------------UCUCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 16135 0.76 0.410596
Target:  5'- aGACC-CCCUAUCGCCGcuucuucucGGAGC-CGGc -3'
miRNA:   3'- gCUGGuGGGGUAGCGGU---------UCUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 184292 0.76 0.427554
Target:  5'- cCGGCCGccgccuCCCCGUC-CC-AGAGCACGGc -3'
miRNA:   3'- -GCUGGU------GGGGUAGcGGuUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 192357 0.76 0.427554
Target:  5'- uCGGCCuCCgCCGcCGCCGAccGAGCGCGGg -3'
miRNA:   3'- -GCUGGuGG-GGUaGCGGUU--CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 137155 0.76 0.439668
Target:  5'- cCGGCCGCCCuCGgucccggccgcucgcUCGCCcgccccacAGAGCACGGa -3'
miRNA:   3'- -GCUGGUGGG-GU---------------AGCGGu-------UCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 194050 0.75 0.453749
Target:  5'- -cGCCGCCgCCGcCGCCGAGAGCGCc- -3'
miRNA:   3'- gcUGGUGG-GGUaGCGGUUCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 23608 0.75 0.462673
Target:  5'- cCGACCcgACCCCGcgggCGCCcGGAcGCGCGGc -3'
miRNA:   3'- -GCUGG--UGGGGUa---GCGGuUCU-CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 53288 0.75 0.48998
Target:  5'- gCGACCACUCCAggUGCCGAGcGguCGGc -3'
miRNA:   3'- -GCUGGUGGGGUa-GCGGUUCuCguGCC- -5'
10849 5' -57.1 NC_002794.1 + 55020 0.74 0.499248
Target:  5'- -cGCCGCCgCGcCGCCGcGAGCACGGc -3'
miRNA:   3'- gcUGGUGGgGUaGCGGUuCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 101264 0.74 0.499248
Target:  5'- gGGCCGCCCCcggCGCCGGuGGCgGCGGc -3'
miRNA:   3'- gCUGGUGGGGua-GCGGUUcUCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 118681 0.74 0.518014
Target:  5'- gCGGCCGCCgCCGgcggcagCGcCCAGGAGCGCa- -3'
miRNA:   3'- -GCUGGUGG-GGUa------GC-GGUUCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 100553 0.74 0.527502
Target:  5'- gCGGCCuuCCCCGUgGCCGAGcGGCACc- -3'
miRNA:   3'- -GCUGGu-GGGGUAgCGGUUC-UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 34824 0.74 0.527502
Target:  5'- -cACCACCCCcUCGCCGgcgccGGAGCgggcgucggaGCGGg -3'
miRNA:   3'- gcUGGUGGGGuAGCGGU-----UCUCG----------UGCC- -5'
10849 5' -57.1 NC_002794.1 + 79340 0.74 0.537053
Target:  5'- gGGCCGCCCgAUCGCgGcgcAGAGCcuguCGGa -3'
miRNA:   3'- gCUGGUGGGgUAGCGgU---UCUCGu---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.