miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 101581 0.73 0.5758
Target:  5'- cCGGCCGCCgCG--GCCGGGGGgGCGGg -3'
miRNA:   3'- -GCUGGUGGgGUagCGGUUCUCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 137562 0.73 0.5758
Target:  5'- aCGuCgCGCCgCCGUCGCCGccggggccGGAGUGCGGg -3'
miRNA:   3'- -GCuG-GUGG-GGUAGCGGU--------UCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 71818 0.73 0.585595
Target:  5'- aGGCCGCCUCGUCGCgAGGAucGCcguccccgucgACGGg -3'
miRNA:   3'- gCUGGUGGGGUAGCGgUUCU--CG-----------UGCC- -5'
10849 5' -57.1 NC_002794.1 + 126637 0.73 0.59542
Target:  5'- gCGACCggGCgCCCGgacgCGCCGAGAGaccgACGGg -3'
miRNA:   3'- -GCUGG--UG-GGGUa---GCGGUUCUCg---UGCC- -5'
10849 5' -57.1 NC_002794.1 + 93818 0.73 0.605272
Target:  5'- uCGACC-CCgagcuggcggCCAUCGCCGAGAuCAUGGa -3'
miRNA:   3'- -GCUGGuGG----------GGUAGCGGUUCUcGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 58630 0.72 0.615141
Target:  5'- gGugCGCCUgAUCGCCAcGcAGCugGGc -3'
miRNA:   3'- gCugGUGGGgUAGCGGUuC-UCGugCC- -5'
10849 5' -57.1 NC_002794.1 + 44475 0.72 0.615141
Target:  5'- aGACCGCCCCGUCGaaaCA-GAGacguugucuCACGGc -3'
miRNA:   3'- gCUGGUGGGGUAGCg--GUuCUC---------GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 183377 0.72 0.615141
Target:  5'- cCGGCCguGCCCCGUccCGCCGAGcugcagcaacAGcCACGGg -3'
miRNA:   3'- -GCUGG--UGGGGUA--GCGGUUC----------UC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 36864 0.72 0.625023
Target:  5'- aGACCGCCacugCAgccgCGCCAGGuAGCGCGu -3'
miRNA:   3'- gCUGGUGGg---GUa---GCGGUUC-UCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 81323 0.72 0.641829
Target:  5'- uCGGCCAagccgcgguacgcuCCgCCGUCGCCGAcGGGCAUGa -3'
miRNA:   3'- -GCUGGU--------------GG-GGUAGCGGUU-CUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 58423 0.72 0.644794
Target:  5'- gCGGCCGCCgCCAgaCGCCGAGGcCACGc -3'
miRNA:   3'- -GCUGGUGG-GGUa-GCGGUUCUcGUGCc -5'
10849 5' -57.1 NC_002794.1 + 65749 0.72 0.651708
Target:  5'- cCGACgGCCCCG-CGCCGccgccgcccgugguGGGGCcgaGCGGa -3'
miRNA:   3'- -GCUGgUGGGGUaGCGGU--------------UCUCG---UGCC- -5'
10849 5' -57.1 NC_002794.1 + 23071 0.72 0.654669
Target:  5'- aGcCCGCCCUcggcgaugAggGUCAAGAGCACGGa -3'
miRNA:   3'- gCuGGUGGGG--------UagCGGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 128016 0.72 0.654669
Target:  5'- uCGGCCGCCCCGUCGgCUGAcacccCGCGGg -3'
miRNA:   3'- -GCUGGUGGGGUAGC-GGUUcuc--GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 111661 0.72 0.654669
Target:  5'- gCGGCCACgCCCGUCGgauacggucguCCAggccgugaAGAGCACGu -3'
miRNA:   3'- -GCUGGUG-GGGUAGC-----------GGU--------UCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 52625 0.72 0.654669
Target:  5'- cCGACCGCCgCcgCGUCGaacgGGAGC-CGGa -3'
miRNA:   3'- -GCUGGUGGgGuaGCGGU----UCUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 103554 0.71 0.663543
Target:  5'- aGGCCACCauggcguccgacgCCGUgGCCGAcGAGCAgCGGu -3'
miRNA:   3'- gCUGGUGG-------------GGUAgCGGUU-CUCGU-GCC- -5'
10849 5' -57.1 NC_002794.1 + 90880 0.71 0.674362
Target:  5'- cCGGCCGCCuucguguuCCAUaaCGCCGAGGccaucgugucccGCACGGa -3'
miRNA:   3'- -GCUGGUGG--------GGUA--GCGGUUCU------------CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 10296 0.71 0.684164
Target:  5'- aGACgACCCCGUCGgCGAGAGacuccgACGa -3'
miRNA:   3'- gCUGgUGGGGUAGCgGUUCUCg-----UGCc -5'
10849 5' -57.1 NC_002794.1 + 191705 0.71 0.684164
Target:  5'- gGACCACCUCcucGUCGuCCGAGcGGCccACGGa -3'
miRNA:   3'- gCUGGUGGGG---UAGC-GGUUC-UCG--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.