miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 141997 0.71 0.692951
Target:  5'- cCGACCGCCCCAcguuguucaagUUGCCG-GAGgugcuucgccuguCGCGGg -3'
miRNA:   3'- -GCUGGUGGGGU-----------AGCGGUuCUC-------------GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 22550 0.71 0.693925
Target:  5'- gGACCGuCCgCCAcCGCCGAcacGGCACGGc -3'
miRNA:   3'- gCUGGU-GG-GGUaGCGGUUc--UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 148791 0.71 0.693925
Target:  5'- cCGGuCCGCaCCGUCGCCGAGcaCGCGGa -3'
miRNA:   3'- -GCU-GGUGgGGUAGCGGUUCucGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 242 0.71 0.693925
Target:  5'- aCGAaacCCACCCCGgacugcCGCCGcGcGCGCGGa -3'
miRNA:   3'- -GCU---GGUGGGGUa-----GCGGUuCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 72246 0.71 0.693925
Target:  5'- aCGAuCCGCCaCCAUUGCCccAGuuccGCGCGGa -3'
miRNA:   3'- -GCU-GGUGG-GGUAGCGGu-UCu---CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 114039 0.71 0.697817
Target:  5'- gCGGCCGCCCguaGUCGCCGcgcaccagcuccguGAGCucGCGGu -3'
miRNA:   3'- -GCUGGUGGGg--UAGCGGUu-------------CUCG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 181598 0.71 0.700731
Target:  5'- gCGACCgggucGCCCCGUUGCCGcaucucgcacguguAGGGCGgagccCGGg -3'
miRNA:   3'- -GCUGG-----UGGGGUAGCGGU--------------UCUCGU-----GCC- -5'
10849 5' -57.1 NC_002794.1 + 149263 0.71 0.703639
Target:  5'- -cACCACCCuCGUcccCGCCGGcGGCGCGGc -3'
miRNA:   3'- gcUGGUGGG-GUA---GCGGUUcUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 192237 0.71 0.703639
Target:  5'- uCGG-CGCUgCCGUCGCCGAcGGCGCGGu -3'
miRNA:   3'- -GCUgGUGG-GGUAGCGGUUcUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 18733 0.71 0.703639
Target:  5'- aCGAgCCGCCCCAaCGCCAcGAcgGCcgGCGGc -3'
miRNA:   3'- -GCU-GGUGGGGUaGCGGUuCU--CG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 110276 0.71 0.703639
Target:  5'- aCGGCgGCCgCCGUCcucgggcCCGAGAGcCGCGGg -3'
miRNA:   3'- -GCUGgUGG-GGUAGc------GGUUCUC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 132982 0.71 0.703639
Target:  5'- uGACCA-CCgGUCGCCGAGcGUACGu -3'
miRNA:   3'- gCUGGUgGGgUAGCGGUUCuCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 53982 0.71 0.712333
Target:  5'- cCGGCUGCCCCG-CGCCAgcgucuccagcAGcucccgcAGCACGGc -3'
miRNA:   3'- -GCUGGUGGGGUaGCGGU-----------UC-------UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 81921 0.71 0.713296
Target:  5'- -uGCCGCUCCAaCGCCAAGAcgguGCACa- -3'
miRNA:   3'- gcUGGUGGGGUaGCGGUUCU----CGUGcc -5'
10849 5' -57.1 NC_002794.1 + 180684 0.71 0.713296
Target:  5'- cCGGCCGCuCCCggCGCCcGGcGgGCGGa -3'
miRNA:   3'- -GCUGGUG-GGGuaGCGGuUCuCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 77954 0.71 0.713296
Target:  5'- gCGAUCGCCgCCGUCGCC--GAGC-CGa -3'
miRNA:   3'- -GCUGGUGG-GGUAGCGGuuCUCGuGCc -5'
10849 5' -57.1 NC_002794.1 + 51369 0.71 0.713296
Target:  5'- gCGGCCGCCCCGUCcgGCCGGcgacaGGCGCc- -3'
miRNA:   3'- -GCUGGUGGGGUAG--CGGUUc----UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 44344 0.71 0.713296
Target:  5'- aGACgGCgCCGgcgaGaCCGAGAGCGCGGc -3'
miRNA:   3'- gCUGgUGgGGUag--C-GGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 141416 0.7 0.72861
Target:  5'- aCGAUgACCUCGggggcggcgggggCGCCGGGGGCGcCGGg -3'
miRNA:   3'- -GCUGgUGGGGUa------------GCGGUUCUCGU-GCC- -5'
10849 5' -57.1 NC_002794.1 + 141574 0.7 0.729561
Target:  5'- gCGGCCuccgugaucaugacGCCCgCGUCGCCGGGcGGCuCGGc -3'
miRNA:   3'- -GCUGG--------------UGGG-GUAGCGGUUC-UCGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.