miRNA display CGI


Results 61 - 80 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 83953 0.7 0.732409
Target:  5'- gGACCGCCUgGgcCGCCuGGAGCGCcuGGa -3'
miRNA:   3'- gCUGGUGGGgUa-GCGGuUCUCGUG--CC- -5'
10849 5' -57.1 NC_002794.1 + 66722 0.7 0.732409
Target:  5'- aCGGCCGCCgCCAcCGCCGgcGGuGGCgGCGGc -3'
miRNA:   3'- -GCUGGUGG-GGUaGCGGU--UC-UCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 45893 0.7 0.732409
Target:  5'- cCGACCgaGCCCCGccCGCCGccGGCACcGGg -3'
miRNA:   3'- -GCUGG--UGGGGUa-GCGGUucUCGUG-CC- -5'
10849 5' -57.1 NC_002794.1 + 55530 0.7 0.739026
Target:  5'- cCGGCgGCCCCGUCGCCcucccguuugcucuuGccguacuGCACGGg -3'
miRNA:   3'- -GCUGgUGGGGUAGCGGuu-------------Cu------CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 98352 0.7 0.741848
Target:  5'- aCGACCGgCCgAUCGCCGcGcGGCugGCGGg -3'
miRNA:   3'- -GCUGGUgGGgUAGCGGUuC-UCG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 146179 0.7 0.741848
Target:  5'- gGAgCGCUUCGagGCCGAG-GCGCGGg -3'
miRNA:   3'- gCUgGUGGGGUagCGGUUCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 91367 0.7 0.741848
Target:  5'- cCGAgCACCUgAUCGaCGAGGGCAUGa -3'
miRNA:   3'- -GCUgGUGGGgUAGCgGUUCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 30074 0.7 0.751198
Target:  5'- cCGGUCGCCCgGUCGaCGAGGcGCGCGGc -3'
miRNA:   3'- -GCUGGUGGGgUAGCgGUUCU-CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 63636 0.7 0.759529
Target:  5'- cCGAgCACCUCGUcugcgugacCGCCAAcgucucggacgacGAGCGCGGc -3'
miRNA:   3'- -GCUgGUGGGGUA---------GCGGUU-------------CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 49392 0.7 0.760449
Target:  5'- aGGCCGCCgCCGUCGgCCAcGGcGGcCGCGGc -3'
miRNA:   3'- gCUGGUGG-GGUAGC-GGU-UC-UC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 123499 0.7 0.760449
Target:  5'- gGACCugUgCAUCGCCGGGcuGC-CGGc -3'
miRNA:   3'- gCUGGugGgGUAGCGGUUCu-CGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 183618 0.7 0.760449
Target:  5'- gCGGCCggcGCCCCcgCGCCcccgacucGAGCAgGGc -3'
miRNA:   3'- -GCUGG---UGGGGuaGCGGuu------CUCGUgCC- -5'
10849 5' -57.1 NC_002794.1 + 115603 0.7 0.769595
Target:  5'- uCGACCcgcucGCCCgG-CGCCGGGAG-GCGGg -3'
miRNA:   3'- -GCUGG-----UGGGgUaGCGGUUCUCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 86531 0.7 0.769595
Target:  5'- cCGACCggauGCCCCGg-GCCGAGccGGgACGGa -3'
miRNA:   3'- -GCUGG----UGGGGUagCGGUUC--UCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 86363 0.7 0.769595
Target:  5'- cCGACCggauGCCCCGg-GCCGAGccGGgACGGa -3'
miRNA:   3'- -GCUGG----UGGGGUagCGGUUC--UCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 68925 0.7 0.769595
Target:  5'- gCGGCguCCUCGUCGCCcgcGGGcCGCGGc -3'
miRNA:   3'- -GCUGguGGGGUAGCGGuu-CUC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 86171 0.7 0.769595
Target:  5'- cCGACCggauGCCCCGg-GCCGAGccGGgACGGa -3'
miRNA:   3'- -GCUGG----UGGGGUagCGGUUC--UCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 107868 0.69 0.778626
Target:  5'- --uCCACUgCAUCGCgGAGgcGGCGCGGc -3'
miRNA:   3'- gcuGGUGGgGUAGCGgUUC--UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 187545 0.69 0.782205
Target:  5'- gCGACCGCCgCCAcCGCCGccgucgGGcccguacccgccgucGGCGCGGc -3'
miRNA:   3'- -GCUGGUGG-GGUaGCGGU------UC---------------UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 52919 0.69 0.787535
Target:  5'- -cGCCGCCgCCGUCGCUcGGccGGCACGc -3'
miRNA:   3'- gcUGGUGG-GGUAGCGGuUC--UCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.