miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 120166 0.66 0.924314
Target:  5'- gGACCucgagauCCUCcgCGCCGccaagcgguucaAGGGCACGa -3'
miRNA:   3'- gCUGGu------GGGGuaGCGGU------------UCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 181876 0.66 0.924314
Target:  5'- -cGCUGCCCCgggGUCGCgaaCAGGcgacAGCGCGGg -3'
miRNA:   3'- gcUGGUGGGG---UAGCG---GUUC----UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 41675 0.66 0.924314
Target:  5'- gGGCCGCCgCAggagCGCCcGGAccGC-CGGa -3'
miRNA:   3'- gCUGGUGGgGUa---GCGGuUCU--CGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 79116 0.66 0.924314
Target:  5'- aCGGCCGuCUUCuUCGCCAccGAGUACGa -3'
miRNA:   3'- -GCUGGU-GGGGuAGCGGUu-CUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 53197 0.66 0.924314
Target:  5'- cCGAgCCACCCggacucguCGUCGUCGAGcGGCgaaACGGu -3'
miRNA:   3'- -GCU-GGUGGG--------GUAGCGGUUC-UCG---UGCC- -5'
10849 5' -57.1 NC_002794.1 + 56516 0.66 0.923787
Target:  5'- gCGGgCGCUCCggcgcucguuccgGUCGCCAuccGGAGCGCu- -3'
miRNA:   3'- -GCUgGUGGGG-------------UAGCGGU---UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 62324 0.66 0.918952
Target:  5'- -aACCGCCCC-UCGCUGgcGGAGCccGCGc -3'
miRNA:   3'- gcUGGUGGGGuAGCGGU--UCUCG--UGCc -5'
10849 5' -57.1 NC_002794.1 + 67351 0.66 0.918952
Target:  5'- -cGCCGCCCCA-CGCCGcacAGCGCc- -3'
miRNA:   3'- gcUGGUGGGGUaGCGGUuc-UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 125773 0.66 0.918952
Target:  5'- -cGCCACCCgGcugcgagCGCuCAAGAGCugGu -3'
miRNA:   3'- gcUGGUGGGgUa------GCG-GUUCUCGugCc -5'
10849 5' -57.1 NC_002794.1 + 99241 0.66 0.918952
Target:  5'- gGACCgccggACCCCGcCGCgGAGgGGCuCGGg -3'
miRNA:   3'- gCUGG-----UGGGGUaGCGgUUC-UCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 18796 0.66 0.918952
Target:  5'- uCGACgGCCCCGcCgGCCAAcGGguCGGc -3'
miRNA:   3'- -GCUGgUGGGGUaG-CGGUUcUCguGCC- -5'
10849 5' -57.1 NC_002794.1 + 37251 0.66 0.918952
Target:  5'- uCGACgCucucgcuCUCCGUCGgCGGGcGCGCGGg -3'
miRNA:   3'- -GCUG-Gu------GGGGUAGCgGUUCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 26655 0.66 0.918952
Target:  5'- gCGGCCGgCUCGUCGgCGggguGGAGCGCc- -3'
miRNA:   3'- -GCUGGUgGGGUAGCgGU----UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 114862 0.66 0.918952
Target:  5'- -cGCCGCUCCAgCGCCucGAGCAg-- -3'
miRNA:   3'- gcUGGUGGGGUaGCGGuuCUCGUgcc -5'
10849 5' -57.1 NC_002794.1 + 92390 0.66 0.918403
Target:  5'- gGACUACUgCAagcggaacUCGCUGAucgacccGAGCACGGg -3'
miRNA:   3'- gCUGGUGGgGU--------AGCGGUU-------CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 74078 0.66 0.918403
Target:  5'- gCGGCC-CUCC-UCGCCGAGucgggacAGCuGCGGc -3'
miRNA:   3'- -GCUGGuGGGGuAGCGGUUC-------UCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 194492 0.66 0.913367
Target:  5'- -aGCCGCCCCuccgCGCCcGGccCGCGGc -3'
miRNA:   3'- gcUGGUGGGGua--GCGGuUCucGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 43332 0.66 0.913367
Target:  5'- aCGACCACgCag-CGCCGGuugaaguccGAGUGCGGc -3'
miRNA:   3'- -GCUGGUGgGguaGCGGUU---------CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 55300 0.66 0.913367
Target:  5'- gCGGCgGCggCGUCGCgGcGGGCGCGGg -3'
miRNA:   3'- -GCUGgUGggGUAGCGgUuCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 107204 0.66 0.913367
Target:  5'- cCGGCCuCgCCCGgcgcCGCCGGGcGGCGCGc -3'
miRNA:   3'- -GCUGGuG-GGGUa---GCGGUUC-UCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.