miRNA display CGI


Results 41 - 60 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 43332 0.66 0.913367
Target:  5'- aCGACCACgCag-CGCCGGuugaaguccGAGUGCGGc -3'
miRNA:   3'- -GCUGGUGgGguaGCGGUU---------CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 194492 0.66 0.913367
Target:  5'- -aGCCGCCCCuccgCGCCcGGccCGCGGc -3'
miRNA:   3'- gcUGGUGGGGua--GCGGuUCucGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 149513 0.66 0.913367
Target:  5'- uGACgGggUCGUCGCCGGGAGCggaccugggGCGGa -3'
miRNA:   3'- gCUGgUggGGUAGCGGUUCUCG---------UGCC- -5'
10849 5' -57.1 NC_002794.1 + 145666 0.66 0.912797
Target:  5'- cCGAUCuCCCCAUCGCgAcgucgguAGAGguCGa -3'
miRNA:   3'- -GCUGGuGGGGUAGCGgU-------UCUCguGCc -5'
10849 5' -57.1 NC_002794.1 + 67306 0.66 0.912797
Target:  5'- aCGACCcaggucgggucgcGCCCguaCAUCGCCAGGGuGCccCGGc -3'
miRNA:   3'- -GCUGG-------------UGGG---GUAGCGGUUCU-CGu-GCC- -5'
10849 5' -57.1 NC_002794.1 + 20422 0.66 0.907562
Target:  5'- aCGGuCUACCCCG-CGCCG-GAGgACGu -3'
miRNA:   3'- -GCU-GGUGGGGUaGCGGUuCUCgUGCc -5'
10849 5' -57.1 NC_002794.1 + 134114 0.66 0.907562
Target:  5'- gGACCcCCuCCGUCcgacgGCgCGGcGAGCGCGGa -3'
miRNA:   3'- gCUGGuGG-GGUAG-----CG-GUU-CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 138562 0.66 0.907562
Target:  5'- cCGcCCGCUCCGUCGUCGcucgaucgaGGcgcgucGGCGCGGc -3'
miRNA:   3'- -GCuGGUGGGGUAGCGGU---------UC------UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 181296 0.66 0.906969
Target:  5'- -cACCACCCCcagGCCGAGcaggaucAGCGCGa -3'
miRNA:   3'- gcUGGUGGGGuagCGGUUC-------UCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 130 0.67 0.901537
Target:  5'- cCGACCggaGCCCgGgacCGCCGcaGGGGCGCa- -3'
miRNA:   3'- -GCUGG---UGGGgUa--GCGGU--UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 179197 0.67 0.901537
Target:  5'- aGGCaCGCCCCG--GCCGGcGGCACGa -3'
miRNA:   3'- gCUG-GUGGGGUagCGGUUcUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 185387 0.67 0.901537
Target:  5'- aGGCCAgCCagaaGaCGAGGGCGCGGg -3'
miRNA:   3'- gCUGGUgGGguagCgGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 181753 0.67 0.901537
Target:  5'- cCGGCCAgCCCGcugaCGCCGAuGGCGCc- -3'
miRNA:   3'- -GCUGGUgGGGUa---GCGGUUcUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 149719 0.67 0.901537
Target:  5'- gGGCCGCCugCC-UCGCUAcggcgugccgguGGAGCgGCGGg -3'
miRNA:   3'- gCUGGUGG--GGuAGCGGU------------UCUCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 14872 0.67 0.901537
Target:  5'- -aGCCGCCCgGuUCGCCGcGAGC-CGa -3'
miRNA:   3'- gcUGGUGGGgU-AGCGGUuCUCGuGCc -5'
10849 5' -57.1 NC_002794.1 + 183829 0.67 0.901537
Target:  5'- -cACCGCCuCCGUCGCCGAcGAcaggcucuccGuCGCGGc -3'
miRNA:   3'- gcUGGUGG-GGUAGCGGUU-CU----------C-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 91487 0.67 0.897817
Target:  5'- gCGACCagcuguugcugugcgACgCCAUCGCCugcGAGCugGc -3'
miRNA:   3'- -GCUGG---------------UGgGGUAGCGGuu-CUCGugCc -5'
10849 5' -57.1 NC_002794.1 + 153281 0.67 0.895294
Target:  5'- -cGCCGaCCCGUCGcCCGAGAcGCAggcCGGg -3'
miRNA:   3'- gcUGGUgGGGUAGC-GGUUCU-CGU---GCC- -5'
10849 5' -57.1 NC_002794.1 + 146335 0.67 0.895294
Target:  5'- gGAUUcgACCCCGUCGUCGAucGCgGCGGc -3'
miRNA:   3'- gCUGG--UGGGGUAGCGGUUcuCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 80856 0.67 0.895294
Target:  5'- -cACCuACCCCGUCuacuucuUCAAGAGCGCGu -3'
miRNA:   3'- gcUGG-UGGGGUAGc------GGUUCUCGUGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.