miRNA display CGI


Results 61 - 80 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 80856 0.67 0.895294
Target:  5'- -cACCuACCCCGUCuacuucuUCAAGAGCGCGu -3'
miRNA:   3'- gcUGG-UGGGGUAGc------GGUUCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 146335 0.67 0.895294
Target:  5'- gGAUUcgACCCCGUCGUCGAucGCgGCGGc -3'
miRNA:   3'- gCUGG--UGGGGUAGCGGUUcuCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 153281 0.67 0.895294
Target:  5'- -cGCCGaCCCGUCGcCCGAGAcGCAggcCGGg -3'
miRNA:   3'- gcUGGUgGGGUAGC-GGUUCU-CGU---GCC- -5'
10849 5' -57.1 NC_002794.1 + 183527 0.67 0.895294
Target:  5'- gCGGCCgugcgcGCCCCGUcCGCCcGGGGaCACu- -3'
miRNA:   3'- -GCUGG------UGGGGUA-GCGGuUCUC-GUGcc -5'
10849 5' -57.1 NC_002794.1 + 183193 0.67 0.888837
Target:  5'- aGACgCGCCgCCA-CGCCGGcGGCGCGu -3'
miRNA:   3'- gCUG-GUGG-GGUaGCGGUUcUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 58059 0.67 0.888837
Target:  5'- uCGGCgGCCCCGgcggCGgCGGGAcGgGCGGc -3'
miRNA:   3'- -GCUGgUGGGGUa---GCgGUUCU-CgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 56235 0.67 0.888837
Target:  5'- uGGCC-UCCCAcuccUCGCaguagcAGGGCACGGc -3'
miRNA:   3'- gCUGGuGGGGU----AGCGgu----UCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 7085 0.67 0.888837
Target:  5'- gGACCuCCCCcUCGCUcAGGGUGUGGu -3'
miRNA:   3'- gCUGGuGGGGuAGCGGuUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 24177 0.67 0.888837
Target:  5'- cCGGCCucgACCCCG-CGgcaCCGAGAccgaGCGCGGc -3'
miRNA:   3'- -GCUGG---UGGGGUaGC---GGUUCU----CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 99444 0.67 0.888837
Target:  5'- gGACCGgaUCCGcCGCCGGGGGUAuCGGc -3'
miRNA:   3'- gCUGGUg-GGGUaGCGGUUCUCGU-GCC- -5'
10849 5' -57.1 NC_002794.1 + 185933 0.67 0.888837
Target:  5'- cCGGCCACCC----GCCAGGcuCGCGGc -3'
miRNA:   3'- -GCUGGUGGGguagCGGUUCucGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 117026 0.67 0.888837
Target:  5'- cCGcGCCACCCCGgguccgacaGCaCGAG-GUACGGg -3'
miRNA:   3'- -GC-UGGUGGGGUag-------CG-GUUCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 125952 0.67 0.88818
Target:  5'- uGGCCGCCUgcgcgcuCGUCGCCGAGuuccugcugcAGCugGc -3'
miRNA:   3'- gCUGGUGGG-------GUAGCGGUUC----------UCGugCc -5'
10849 5' -57.1 NC_002794.1 + 115939 0.67 0.88752
Target:  5'- gGGCCGgCCCgccgcguGUCGCCGgggaccgugggggGGAGCgggACGGg -3'
miRNA:   3'- gCUGGUgGGG-------UAGCGGU-------------UCUCG---UGCC- -5'
10849 5' -57.1 NC_002794.1 + 117638 0.67 0.882169
Target:  5'- cCGACCgcgcgGCCCCGgacgaagagCGCCAc--GCGCGGc -3'
miRNA:   3'- -GCUGG-----UGGGGUa--------GCGGUucuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 83980 0.67 0.882169
Target:  5'- nGACCGCCgcgaaCAcCGCCAcgacGGGCACGa -3'
miRNA:   3'- gCUGGUGGg----GUaGCGGUu---CUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 26098 0.67 0.882169
Target:  5'- cCGACgGCCCCGgcgaUCGCCGuGGGCcugccucgACGa -3'
miRNA:   3'- -GCUGgUGGGGU----AGCGGUuCUCG--------UGCc -5'
10849 5' -57.1 NC_002794.1 + 70882 0.67 0.882169
Target:  5'- gCGGCgGCUCCucgagCGCCAGgucgguGAGCACGu -3'
miRNA:   3'- -GCUGgUGGGGua---GCGGUU------CUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 185552 0.67 0.882169
Target:  5'- cCGGCCgcgcGCCCCGcccUGCCGcggcAGGGCGCGcGg -3'
miRNA:   3'- -GCUGG----UGGGGUa--GCGGU----UCUCGUGC-C- -5'
10849 5' -57.1 NC_002794.1 + 51414 0.67 0.882169
Target:  5'- gCGcACC-CCCCGUCGCUcuuccccgcAGAGCauccGCGGa -3'
miRNA:   3'- -GC-UGGuGGGGUAGCGGu--------UCUCG----UGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.