miRNA display CGI


Results 81 - 100 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 24067 0.67 0.875294
Target:  5'- gGACCACaCCCGUgCGCCc-GGGCG-GGc -3'
miRNA:   3'- gCUGGUG-GGGUA-GCGGuuCUCGUgCC- -5'
10849 5' -57.1 NC_002794.1 + 17950 0.67 0.875294
Target:  5'- gCGGCCACCCgCGacUCGCCcgggccguGAGCcUGGc -3'
miRNA:   3'- -GCUGGUGGG-GU--AGCGGuu------CUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 107286 0.67 0.875294
Target:  5'- cCG-UCGCCCCGUCGUCGacgcuccucgcgGGGGCGCc- -3'
miRNA:   3'- -GCuGGUGGGGUAGCGGU------------UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 67741 0.67 0.875294
Target:  5'- gCGGCCACCCga--GCCcGGAuCACGGc -3'
miRNA:   3'- -GCUGGUGGGguagCGGuUCUcGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 182841 0.67 0.875294
Target:  5'- aCGACCACCagcgugCCGcUCGCCGAGAucaucuugGCGCc- -3'
miRNA:   3'- -GCUGGUGG------GGU-AGCGGUUCU--------CGUGcc -5'
10849 5' -57.1 NC_002794.1 + 181408 0.67 0.875294
Target:  5'- cCGGCCGCCgCCAcCGCCAuGucCGCGa -3'
miRNA:   3'- -GCUGGUGG-GGUaGCGGUuCucGUGCc -5'
10849 5' -57.1 NC_002794.1 + 111861 0.67 0.875294
Target:  5'- -cGCCACCgCCAggGCCuuguAGcGCGCGGu -3'
miRNA:   3'- gcUGGUGG-GGUagCGGu---UCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 18850 0.67 0.873192
Target:  5'- uCGAgCGCgCCGUCGCCGAucgccaacgccaccGAcgccgGCGCGGa -3'
miRNA:   3'- -GCUgGUGgGGUAGCGGUU--------------CU-----CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 186498 0.67 0.868216
Target:  5'- gCGGCgCGCCUCccCGCCGuggaAGcAGCGCGGc -3'
miRNA:   3'- -GCUG-GUGGGGuaGCGGU----UC-UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 145525 0.67 0.868216
Target:  5'- aGGCCGgCCCGagCGCCucGGGCGCc- -3'
miRNA:   3'- gCUGGUgGGGUa-GCGGuuCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 140739 0.67 0.868216
Target:  5'- gCGuCCGCgCCA-CGCCGAGAagcuGCACGc -3'
miRNA:   3'- -GCuGGUGgGGUaGCGGUUCU----CGUGCc -5'
10849 5' -57.1 NC_002794.1 + 61867 0.68 0.86094
Target:  5'- aCGACgccgCGCgCCGUCGUCGGcgccgcgcggcGAGCGCGGc -3'
miRNA:   3'- -GCUG----GUGgGGUAGCGGUU-----------CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 129262 0.68 0.86094
Target:  5'- uCGAgCGCCUCGUCGUgAGcGGGC-CGGu -3'
miRNA:   3'- -GCUgGUGGGGUAGCGgUU-CUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 94761 0.68 0.86094
Target:  5'- aCGugCugCUCGUCGaCGAGGcGCugGGc -3'
miRNA:   3'- -GCugGugGGGUAGCgGUUCU-CGugCC- -5'
10849 5' -57.1 NC_002794.1 + 105431 0.68 0.86094
Target:  5'- uGGCCGCCgCcgCGCCGGcGGCGCc- -3'
miRNA:   3'- gCUGGUGGgGuaGCGGUUcUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 98244 0.68 0.86094
Target:  5'- aGGCCAUcggCCaCAUCGCCGAG-GCcUGGu -3'
miRNA:   3'- gCUGGUG---GG-GUAGCGGUUCuCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 68736 0.68 0.853471
Target:  5'- uCGAacaCACCCCGgagGCCGAcuGAGC-CGGg -3'
miRNA:   3'- -GCUg--GUGGGGUag-CGGUU--CUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 41963 0.68 0.853471
Target:  5'- gCGGCCuggaaggucgGCUCCA-CGCCGAGGGuCAgGGu -3'
miRNA:   3'- -GCUGG----------UGGGGUaGCGGUUCUC-GUgCC- -5'
10849 5' -57.1 NC_002794.1 + 42976 0.68 0.853471
Target:  5'- aGGCCAgCUgGUgCGCCAGGAuGCGCaGGc -3'
miRNA:   3'- gCUGGUgGGgUA-GCGGUUCU-CGUG-CC- -5'
10849 5' -57.1 NC_002794.1 + 2467 0.68 0.853471
Target:  5'- -cACCACCUCAagCGCgCGAGGGCGaucCGGu -3'
miRNA:   3'- gcUGGUGGGGUa-GCG-GUUCUCGU---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.