miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 130 0.67 0.901537
Target:  5'- cCGACCggaGCCCgGgacCGCCGcaGGGGCGCa- -3'
miRNA:   3'- -GCUGG---UGGGgUa--GCGGU--UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 242 0.71 0.693925
Target:  5'- aCGAaacCCACCCCGgacugcCGCCGcGcGCGCGGa -3'
miRNA:   3'- -GCU---GGUGGGGUa-----GCGGUuCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 285 0.66 0.934368
Target:  5'- aCGGCgGCCCUGgcgCGCCGAacGC-CGGg -3'
miRNA:   3'- -GCUGgUGGGGUa--GCGGUUcuCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 2467 0.68 0.853471
Target:  5'- -cACCACCUCAagCGCgCGAGGGCGaucCGGu -3'
miRNA:   3'- gcUGGUGGGGUa-GCG-GUUCUCGU---GCC- -5'
10849 5' -57.1 NC_002794.1 + 4024 0.67 0.895294
Target:  5'- aGcACCGCCCCAUC-CCGAGcgaccGGCAUc- -3'
miRNA:   3'- gC-UGGUGGGGUAGcGGUUC-----UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 7085 0.67 0.888837
Target:  5'- gGACCuCCCCcUCGCUcAGGGUGUGGu -3'
miRNA:   3'- gCUGGuGGGGuAGCGGuUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 10296 0.71 0.684164
Target:  5'- aGACgACCCCGUCGgCGAGAGacuccgACGa -3'
miRNA:   3'- gCUGgUGGGGUAGCgGUUCUCg-----UGCc -5'
10849 5' -57.1 NC_002794.1 + 13328 0.66 0.934368
Target:  5'- aCGACCGCUCCcccgGUCGGGGGUGgCGGc -3'
miRNA:   3'- -GCUGGUGGGGuag-CGGUUCUCGU-GCC- -5'
10849 5' -57.1 NC_002794.1 + 14212 0.76 0.405591
Target:  5'- uGGCCGCCCCAaCGCCAcccgccgacgacagaGGAG-ACGGa -3'
miRNA:   3'- gCUGGUGGGGUaGCGGU---------------UCUCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 14872 0.67 0.901537
Target:  5'- -aGCCGCCCgGuUCGCCGcGAGC-CGa -3'
miRNA:   3'- gcUGGUGGGgU-AGCGGUuCUCGuGCc -5'
10849 5' -57.1 NC_002794.1 + 16135 0.76 0.410596
Target:  5'- aGACC-CCCUAUCGCCGcuucuucucGGAGC-CGGc -3'
miRNA:   3'- gCUGGuGGGGUAGCGGU---------UCUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 17950 0.67 0.875294
Target:  5'- gCGGCCACCCgCGacUCGCCcgggccguGAGCcUGGc -3'
miRNA:   3'- -GCUGGUGGG-GU--AGCGGuu------CUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 18733 0.71 0.703639
Target:  5'- aCGAgCCGCCCCAaCGCCAcGAcgGCcgGCGGc -3'
miRNA:   3'- -GCU-GGUGGGGUaGCGGUuCU--CG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 18796 0.66 0.918952
Target:  5'- uCGACgGCCCCGcCgGCCAAcGGguCGGc -3'
miRNA:   3'- -GCUGgUGGGGUaG-CGGUUcUCguGCC- -5'
10849 5' -57.1 NC_002794.1 + 18850 0.67 0.873192
Target:  5'- uCGAgCGCgCCGUCGCCGAucgccaacgccaccGAcgccgGCGCGGa -3'
miRNA:   3'- -GCUgGUGgGGUAGCGGUU--------------CU-----CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 18966 0.66 0.913367
Target:  5'- -cACCACCUCAUCGaCCGGcucaacguGAGCGCc- -3'
miRNA:   3'- gcUGGUGGGGUAGC-GGUU--------CUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 20422 0.66 0.907562
Target:  5'- aCGGuCUACCCCG-CGCCG-GAGgACGu -3'
miRNA:   3'- -GCU-GGUGGGGUaGCGGUuCUCgUGCc -5'
10849 5' -57.1 NC_002794.1 + 21615 0.77 0.370085
Target:  5'- -cACCGCgCCGUCGCCGGGAGgACGa -3'
miRNA:   3'- gcUGGUGgGGUAGCGGUUCUCgUGCc -5'
10849 5' -57.1 NC_002794.1 + 21853 0.69 0.813447
Target:  5'- cCGAUCGCCCCAUugaacggucCGCgAGGccGGcCGCGGg -3'
miRNA:   3'- -GCUGGUGGGGUA---------GCGgUUC--UC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 22550 0.71 0.693925
Target:  5'- gGACCGuCCgCCAcCGCCGAcacGGCACGGc -3'
miRNA:   3'- gCUGGU-GG-GGUaGCGGUUc--UCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.