miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 23071 0.72 0.654669
Target:  5'- aGcCCGCCCUcggcgaugAggGUCAAGAGCACGGa -3'
miRNA:   3'- gCuGGUGGGG--------UagCGGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 23608 0.75 0.462673
Target:  5'- cCGACCcgACCCCGcgggCGCCcGGAcGCGCGGc -3'
miRNA:   3'- -GCUGG--UGGGGUa---GCGGuUCU-CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 23882 0.66 0.913367
Target:  5'- gGACCGCgaa--CGCCGAGGGCcCGGg -3'
miRNA:   3'- gCUGGUGggguaGCGGUUCUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 24067 0.67 0.875294
Target:  5'- gGACCACaCCCGUgCGCCc-GGGCG-GGc -3'
miRNA:   3'- gCUGGUG-GGGUA-GCGGuuCUCGUgCC- -5'
10849 5' -57.1 NC_002794.1 + 24177 0.67 0.888837
Target:  5'- cCGGCCucgACCCCG-CGgcaCCGAGAccgaGCGCGGc -3'
miRNA:   3'- -GCUGG---UGGGGUaGC---GGUUCU----CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 26098 0.67 0.882169
Target:  5'- cCGACgGCCCCGgcgaUCGCCGuGGGCcugccucgACGa -3'
miRNA:   3'- -GCUGgUGGGGU----AGCGGUuCUCG--------UGCc -5'
10849 5' -57.1 NC_002794.1 + 26655 0.66 0.918952
Target:  5'- gCGGCCGgCUCGUCGgCGggguGGAGCGCc- -3'
miRNA:   3'- -GCUGGUgGGGUAGCgGU----UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 27415 0.69 0.787535
Target:  5'- cCGGCCGCCCg--CGuCCGAacGCACGGa -3'
miRNA:   3'- -GCUGGUGGGguaGC-GGUUcuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 30074 0.7 0.751198
Target:  5'- cCGGUCGCCCgGUCGaCGAGGcGCGCGGc -3'
miRNA:   3'- -GCUGGUGGGgUAGCgGUUCU-CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 30934 0.69 0.813447
Target:  5'- aGGCUGCgCCCGccgCGCCGcgAGAcagGCACGGg -3'
miRNA:   3'- gCUGGUG-GGGUa--GCGGU--UCU---CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 34711 0.68 0.845816
Target:  5'- aGGCC-CgCCggCGCCAcGAgGCGCGGg -3'
miRNA:   3'- gCUGGuGgGGuaGCGGUuCU-CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 34775 0.68 0.829967
Target:  5'- aCGGCCGCCCg--CGCCAGccGAGU-CGGc -3'
miRNA:   3'- -GCUGGUGGGguaGCGGUU--CUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 34824 0.74 0.527502
Target:  5'- -cACCACCCCcUCGCCGgcgccGGAGCgggcgucggaGCGGg -3'
miRNA:   3'- gcUGGUGGGGuAGCGGU-----UCUCG----------UGCC- -5'
10849 5' -57.1 NC_002794.1 + 36864 0.72 0.625023
Target:  5'- aGACCGCCacugCAgccgCGCCAGGuAGCGCGu -3'
miRNA:   3'- gCUGGUGGg---GUa---GCGGUUC-UCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 37251 0.66 0.918952
Target:  5'- uCGACgCucucgcuCUCCGUCGgCGGGcGCGCGGg -3'
miRNA:   3'- -GCUG-Gu------GGGGUAGCgGUUCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 41419 0.69 0.804954
Target:  5'- gCGACU-CCUCGUCGUCGGGAGCGu-- -3'
miRNA:   3'- -GCUGGuGGGGUAGCGGUUCUCGUgcc -5'
10849 5' -57.1 NC_002794.1 + 41675 0.66 0.924314
Target:  5'- gGGCCGCCgCAggagCGCCcGGAccGC-CGGa -3'
miRNA:   3'- gCUGGUGGgGUa---GCGGuUCU--CGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 41847 0.69 0.796313
Target:  5'- uCGAUCagcaGCCCCAggcCGCCGggcAGGGC-CGGg -3'
miRNA:   3'- -GCUGG----UGGGGUa--GCGGU---UCUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 41963 0.68 0.853471
Target:  5'- gCGGCCuggaaggucgGCUCCA-CGCCGAGGGuCAgGGu -3'
miRNA:   3'- -GCUGG----------UGGGGUaGCGGUUCUC-GUgCC- -5'
10849 5' -57.1 NC_002794.1 + 42976 0.68 0.853471
Target:  5'- aGGCCAgCUgGUgCGCCAGGAuGCGCaGGc -3'
miRNA:   3'- gCUGGUgGGgUA-GCGGUUCU-CGUG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.