miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 43332 0.66 0.913367
Target:  5'- aCGACCACgCag-CGCCGGuugaaguccGAGUGCGGc -3'
miRNA:   3'- -GCUGGUGgGguaGCGGUU---------CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 44213 0.69 0.813447
Target:  5'- aCGuCCGgCUCGggCGCCGAGGGCuCGGu -3'
miRNA:   3'- -GCuGGUgGGGUa-GCGGUUCUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 44344 0.71 0.713296
Target:  5'- aGACgGCgCCGgcgaGaCCGAGAGCGCGGc -3'
miRNA:   3'- gCUGgUGgGGUag--C-GGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 44475 0.72 0.615141
Target:  5'- aGACCGCCCCGUCGaaaCA-GAGacguugucuCACGGc -3'
miRNA:   3'- gCUGGUGGGGUAGCg--GUuCUC---------GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 44587 0.67 0.895294
Target:  5'- cCGAgCCACCgCCGccuucuugggCGCCgAGGGGCACGu -3'
miRNA:   3'- -GCU-GGUGG-GGUa---------GCGG-UUCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 45893 0.7 0.732409
Target:  5'- cCGACCgaGCCCCGccCGCCGccGGCACcGGg -3'
miRNA:   3'- -GCUGG--UGGGGUa-GCGGUucUCGUG-CC- -5'
10849 5' -57.1 NC_002794.1 + 47189 1.09 0.003284
Target:  5'- uCGACCACCCCAUCGCCAAGAGCACGGc -3'
miRNA:   3'- -GCUGGUGGGGUAGCGGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 47593 0.69 0.796313
Target:  5'- -uGCCGCCCgAUCGCCAGGGuCA-GGu -3'
miRNA:   3'- gcUGGUGGGgUAGCGGUUCUcGUgCC- -5'
10849 5' -57.1 NC_002794.1 + 48915 0.68 0.829967
Target:  5'- gGGCCGCUCCGcagcgccagCGCCAGGcGCuCGGc -3'
miRNA:   3'- gCUGGUGGGGUa--------GCGGUUCuCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 49392 0.7 0.760449
Target:  5'- aGGCCGCCgCCGUCGgCCAcGGcGGcCGCGGc -3'
miRNA:   3'- gCUGGUGG-GGUAGC-GGU-UC-UC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 51369 0.71 0.713296
Target:  5'- gCGGCCGCCCCGUCcgGCCGGcgacaGGCGCc- -3'
miRNA:   3'- -GCUGGUGGGGUAG--CGGUUc----UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 51414 0.67 0.882169
Target:  5'- gCGcACC-CCCCGUCGCUcuuccccgcAGAGCauccGCGGa -3'
miRNA:   3'- -GC-UGGuGGGGUAGCGGu--------UCUCG----UGCC- -5'
10849 5' -57.1 NC_002794.1 + 52625 0.72 0.654669
Target:  5'- cCGACCGCCgCcgCGUCGaacgGGAGC-CGGa -3'
miRNA:   3'- -GCUGGUGGgGuaGCGGU----UCUCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 52919 0.69 0.787535
Target:  5'- -cGCCGCCgCCGUCGCUcGGccGGCACGc -3'
miRNA:   3'- gcUGGUGG-GGUAGCGGuUC--UCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 53197 0.66 0.924314
Target:  5'- cCGAgCCACCCggacucguCGUCGUCGAGcGGCgaaACGGu -3'
miRNA:   3'- -GCU-GGUGGG--------GUAGCGGUUC-UCG---UGCC- -5'
10849 5' -57.1 NC_002794.1 + 53288 0.75 0.48998
Target:  5'- gCGACCACUCCAggUGCCGAGcGguCGGc -3'
miRNA:   3'- -GCUGGUGGGGUa-GCGGUUCuCguGCC- -5'
10849 5' -57.1 NC_002794.1 + 53786 0.66 0.929453
Target:  5'- gCGACgCGCCCgGcggguuucUCGgCGGGAGCcucgGCGGg -3'
miRNA:   3'- -GCUG-GUGGGgU--------AGCgGUUCUCG----UGCC- -5'
10849 5' -57.1 NC_002794.1 + 53905 0.66 0.929453
Target:  5'- gCGGCguCCUCGUCGCCGucGGcGGCGCc- -3'
miRNA:   3'- -GCUGguGGGGUAGCGGU--UC-UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 53982 0.71 0.712333
Target:  5'- cCGGCUGCCCCG-CGCCAgcgucuccagcAGcucccgcAGCACGGc -3'
miRNA:   3'- -GCUGGUGGGGUaGCGGU-----------UC-------UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 54839 0.68 0.829967
Target:  5'- uCGGCgGCaCCCAaCGCCcguAGGccGGCGCGGg -3'
miRNA:   3'- -GCUGgUG-GGGUaGCGG---UUC--UCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.