miRNA display CGI


Results 61 - 80 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 55020 0.74 0.499248
Target:  5'- -cGCCGCCgCGcCGCCGcGAGCACGGc -3'
miRNA:   3'- gcUGGUGGgGUaGCGGUuCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 55300 0.66 0.913367
Target:  5'- gCGGCgGCggCGUCGCgGcGGGCGCGGg -3'
miRNA:   3'- -GCUGgUGggGUAGCGgUuCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 55530 0.7 0.739026
Target:  5'- cCGGCgGCCCCGUCGCCcucccguuugcucuuGccguacuGCACGGg -3'
miRNA:   3'- -GCUGgUGGGGUAGCGGuu-------------Cu------CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 56235 0.67 0.888837
Target:  5'- uGGCC-UCCCAcuccUCGCaguagcAGGGCACGGc -3'
miRNA:   3'- gCUGGuGGGGU----AGCGgu----UCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 56516 0.66 0.923787
Target:  5'- gCGGgCGCUCCggcgcucguuccgGUCGCCAuccGGAGCGCu- -3'
miRNA:   3'- -GCUgGUGGGG-------------UAGCGGU---UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 58059 0.67 0.888837
Target:  5'- uCGGCgGCCCCGgcggCGgCGGGAcGgGCGGc -3'
miRNA:   3'- -GCUGgUGGGGUa---GCgGUUCU-CgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 58423 0.72 0.644794
Target:  5'- gCGGCCGCCgCCAgaCGCCGAGGcCACGc -3'
miRNA:   3'- -GCUGGUGG-GGUa-GCGGUUCUcGUGCc -5'
10849 5' -57.1 NC_002794.1 + 58630 0.72 0.615141
Target:  5'- gGugCGCCUgAUCGCCAcGcAGCugGGc -3'
miRNA:   3'- gCugGUGGGgUAGCGGUuC-UCGugCC- -5'
10849 5' -57.1 NC_002794.1 + 59782 0.82 0.186015
Target:  5'- -aACCACCCCAUCGUCAccaaggaGGAGCGCGa -3'
miRNA:   3'- gcUGGUGGGGUAGCGGU-------UCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 60562 0.68 0.829967
Target:  5'- aGGCCuACCCCAUCuaCAuGAGCuccacgcCGGg -3'
miRNA:   3'- gCUGG-UGGGGUAGcgGUuCUCGu------GCC- -5'
10849 5' -57.1 NC_002794.1 + 60677 0.68 0.853471
Target:  5'- -cGCCGCCuCCGUCGaCGGGAGcCGCGc -3'
miRNA:   3'- gcUGGUGG-GGUAGCgGUUCUC-GUGCc -5'
10849 5' -57.1 NC_002794.1 + 61867 0.68 0.86094
Target:  5'- aCGACgccgCGCgCCGUCGUCGGcgccgcgcggcGAGCGCGGc -3'
miRNA:   3'- -GCUG----GUGgGGUAGCGGUU-----------CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 62324 0.66 0.918952
Target:  5'- -aACCGCCCC-UCGCUGgcGGAGCccGCGc -3'
miRNA:   3'- gcUGGUGGGGuAGCGGU--UCUCG--UGCc -5'
10849 5' -57.1 NC_002794.1 + 63636 0.7 0.759529
Target:  5'- cCGAgCACCUCGUcugcgugacCGCCAAcgucucggacgacGAGCGCGGc -3'
miRNA:   3'- -GCUgGUGGGGUA---------GCGGUU-------------CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 65749 0.72 0.651708
Target:  5'- cCGACgGCCCCG-CGCCGccgccgcccgugguGGGGCcgaGCGGa -3'
miRNA:   3'- -GCUGgUGGGGUaGCGGU--------------UCUCG---UGCC- -5'
10849 5' -57.1 NC_002794.1 + 66722 0.7 0.732409
Target:  5'- aCGGCCGCCgCCAcCGCCGgcGGuGGCgGCGGc -3'
miRNA:   3'- -GCUGGUGG-GGUaGCGGU--UC-UCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 67306 0.66 0.912797
Target:  5'- aCGACCcaggucgggucgcGCCCguaCAUCGCCAGGGuGCccCGGc -3'
miRNA:   3'- -GCUGG-------------UGGG---GUAGCGGUUCU-CGu-GCC- -5'
10849 5' -57.1 NC_002794.1 + 67351 0.66 0.918952
Target:  5'- -cGCCGCCCCA-CGCCGcacAGCGCc- -3'
miRNA:   3'- gcUGGUGGGGUaGCGGUuc-UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 67741 0.67 0.875294
Target:  5'- gCGGCCACCCga--GCCcGGAuCACGGc -3'
miRNA:   3'- -GCUGGUGGGguagCGGuUCUcGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 68340 0.66 0.924314
Target:  5'- uGACCgGgUUCAUcCGCCAAGAG-ACGGg -3'
miRNA:   3'- gCUGG-UgGGGUA-GCGGUUCUCgUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.