miRNA display CGI


Results 1 - 20 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 195307 0.66 0.929453
Target:  5'- aCGcACCGCCgCGUCGCCuucgccGAGUAgUGGc -3'
miRNA:   3'- -GC-UGGUGGgGUAGCGGuu----CUCGU-GCC- -5'
10849 5' -57.1 NC_002794.1 + 195254 0.66 0.934368
Target:  5'- cCGACCACCCCG--GCgGGGAcuGCAgCGa -3'
miRNA:   3'- -GCUGGUGGGGUagCGgUUCU--CGU-GCc -5'
10849 5' -57.1 NC_002794.1 + 194492 0.66 0.913367
Target:  5'- -aGCCGCCCCuccgCGCCcGGccCGCGGc -3'
miRNA:   3'- gcUGGUGGGGua--GCGGuUCucGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 194050 0.75 0.453749
Target:  5'- -cGCCGCCgCCGcCGCCGAGAGCGCc- -3'
miRNA:   3'- gcUGGUGG-GGUaGCGGUUCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 192637 0.69 0.796313
Target:  5'- gCGGCCGCUCCAgccgCGCCGcc-GCGCGc -3'
miRNA:   3'- -GCUGGUGGGGUa---GCGGUucuCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 192602 0.68 0.845816
Target:  5'- cCGACCACUUCucucCGCCA--GGUGCGGa -3'
miRNA:   3'- -GCUGGUGGGGua--GCGGUucUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 192389 0.69 0.820961
Target:  5'- uGACCGCCaCCGccgCGCCGGGGuagucgaaacgccGCgACGGg -3'
miRNA:   3'- gCUGGUGG-GGUa--GCGGUUCU-------------CG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 192357 0.76 0.427554
Target:  5'- uCGGCCuCCgCCGcCGCCGAccGAGCGCGGg -3'
miRNA:   3'- -GCUGGuGG-GGUaGCGGUU--CUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 192237 0.71 0.703639
Target:  5'- uCGG-CGCUgCCGUCGCCGAcGGCGCGGu -3'
miRNA:   3'- -GCUgGUGG-GGUAGCGGUUcUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 191705 0.71 0.684164
Target:  5'- gGACCACCUCcucGUCGuCCGAGcGGCccACGGa -3'
miRNA:   3'- gCUGGUGGGG---UAGC-GGUUC-UCG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 190549 0.68 0.829967
Target:  5'- gCGGuCCGCgUCCGUCGCCGAcAGCACc- -3'
miRNA:   3'- -GCU-GGUG-GGGUAGCGGUUcUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 190482 0.66 0.934368
Target:  5'- aCGGgUGCCCCA-CGCCGcccaGGAGauacCACGGc -3'
miRNA:   3'- -GCUgGUGGGGUaGCGGU----UCUC----GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 187545 0.69 0.782205
Target:  5'- gCGACCGCCgCCAcCGCCGccgucgGGcccguacccgccgucGGCGCGGc -3'
miRNA:   3'- -GCUGGUGG-GGUaGCGGU------UC---------------UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 186498 0.67 0.868216
Target:  5'- gCGGCgCGCCUCccCGCCGuggaAGcAGCGCGGc -3'
miRNA:   3'- -GCUG-GUGGGGuaGCGGU----UC-UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 185933 0.67 0.888837
Target:  5'- cCGGCCACCC----GCCAGGcuCGCGGc -3'
miRNA:   3'- -GCUGGUGGGguagCGGUUCucGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 185770 0.69 0.796313
Target:  5'- gCGGCCGCCCgucacaCGUCgGCC---GGCGCGGg -3'
miRNA:   3'- -GCUGGUGGG------GUAG-CGGuucUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 185552 0.67 0.882169
Target:  5'- cCGGCCgcgcGCCCCGcccUGCCGcggcAGGGCGCGcGg -3'
miRNA:   3'- -GCUGG----UGGGGUa--GCGGU----UCUCGUGC-C- -5'
10849 5' -57.1 NC_002794.1 + 185387 0.67 0.901537
Target:  5'- aGGCCAgCCagaaGaCGAGGGCGCGGg -3'
miRNA:   3'- gCUGGUgGGguagCgGUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 184292 0.76 0.427554
Target:  5'- cCGGCCGccgccuCCCCGUC-CC-AGAGCACGGc -3'
miRNA:   3'- -GCUGGU------GGGGUAGcGGuUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 183898 0.69 0.804954
Target:  5'- -cACCGCCgCCGaCGCCAucuGGGaCACGGu -3'
miRNA:   3'- gcUGGUGG-GGUaGCGGUu--CUC-GUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.