miRNA display CGI


Results 21 - 40 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 183829 0.67 0.901537
Target:  5'- -cACCGCCuCCGUCGCCGAcGAcaggcucuccGuCGCGGc -3'
miRNA:   3'- gcUGGUGG-GGUAGCGGUU-CU----------C-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 183618 0.7 0.760449
Target:  5'- gCGGCCggcGCCCCcgCGCCcccgacucGAGCAgGGc -3'
miRNA:   3'- -GCUGG---UGGGGuaGCGGuu------CUCGUgCC- -5'
10849 5' -57.1 NC_002794.1 + 183527 0.67 0.895294
Target:  5'- gCGGCCgugcgcGCCCCGUcCGCCcGGGGaCACu- -3'
miRNA:   3'- -GCUGG------UGGGGUA-GCGGuUCUC-GUGcc -5'
10849 5' -57.1 NC_002794.1 + 183377 0.72 0.615141
Target:  5'- cCGGCCguGCCCCGUccCGCCGAGcugcagcaacAGcCACGGg -3'
miRNA:   3'- -GCUGG--UGGGGUA--GCGGUUC----------UC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 183193 0.67 0.888837
Target:  5'- aGACgCGCCgCCA-CGCCGGcGGCGCGu -3'
miRNA:   3'- gCUG-GUGG-GGUaGCGGUUcUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 182841 0.67 0.875294
Target:  5'- aCGACCACCagcgugCCGcUCGCCGAGAucaucuugGCGCc- -3'
miRNA:   3'- -GCUGGUGG------GGU-AGCGGUUCU--------CGUGcc -5'
10849 5' -57.1 NC_002794.1 + 182125 0.66 0.934368
Target:  5'- -cGCCAgCCgAaccgCGCCAAGucgucGCACGGg -3'
miRNA:   3'- gcUGGUgGGgUa---GCGGUUCu----CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 181876 0.66 0.924314
Target:  5'- -cGCUGCCCCgggGUCGCgaaCAGGcgacAGCGCGGg -3'
miRNA:   3'- gcUGGUGGGG---UAGCG---GUUC----UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 181753 0.67 0.901537
Target:  5'- cCGGCCAgCCCGcugaCGCCGAuGGCGCc- -3'
miRNA:   3'- -GCUGGUgGGGUa---GCGGUUcUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 181598 0.71 0.700731
Target:  5'- gCGACCgggucGCCCCGUUGCCGcaucucgcacguguAGGGCGgagccCGGg -3'
miRNA:   3'- -GCUGG-----UGGGGUAGCGGU--------------UCUCGU-----GCC- -5'
10849 5' -57.1 NC_002794.1 + 181408 0.67 0.875294
Target:  5'- cCGGCCGCCgCCAcCGCCAuGucCGCGa -3'
miRNA:   3'- -GCUGGUGG-GGUaGCGGUuCucGUGCc -5'
10849 5' -57.1 NC_002794.1 + 181296 0.66 0.906969
Target:  5'- -cACCACCCCcagGCCGAGcaggaucAGCGCGa -3'
miRNA:   3'- gcUGGUGGGGuagCGGUUC-------UCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 180684 0.71 0.713296
Target:  5'- cCGGCCGCuCCCggCGCCcGGcGgGCGGa -3'
miRNA:   3'- -GCUGGUG-GGGuaGCGGuUCuCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 179197 0.67 0.901537
Target:  5'- aGGCaCGCCCCG--GCCGGcGGCACGa -3'
miRNA:   3'- gCUG-GUGGGGUagCGGUUcUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 153281 0.67 0.895294
Target:  5'- -cGCCGaCCCGUCGcCCGAGAcGCAggcCGGg -3'
miRNA:   3'- gcUGGUgGGGUAGC-GGUUCU-CGU---GCC- -5'
10849 5' -57.1 NC_002794.1 + 152587 0.68 0.845816
Target:  5'- gCGGCCGCCaCGUC-CCugcGGCGCGGg -3'
miRNA:   3'- -GCUGGUGGgGUAGcGGuucUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 149719 0.67 0.901537
Target:  5'- gGGCCGCCugCC-UCGCUAcggcgugccgguGGAGCgGCGGg -3'
miRNA:   3'- gCUGGUGG--GGuAGCGGU------------UCUCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 149513 0.66 0.913367
Target:  5'- uGACgGggUCGUCGCCGGGAGCggaccugggGCGGa -3'
miRNA:   3'- gCUGgUggGGUAGCGGUUCUCG---------UGCC- -5'
10849 5' -57.1 NC_002794.1 + 149263 0.71 0.703639
Target:  5'- -cACCACCCuCGUcccCGCCGGcGGCGCGGc -3'
miRNA:   3'- gcUGGUGGG-GUA---GCGGUUcUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 149234 0.78 0.325202
Target:  5'- -cGCCGCCgCCGUCGCCGGGGuCGCGGc -3'
miRNA:   3'- gcUGGUGG-GGUAGCGGUUCUcGUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.