miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 148791 0.71 0.693925
Target:  5'- cCGGuCCGCaCCGUCGCCGAGcaCGCGGa -3'
miRNA:   3'- -GCU-GGUGgGGUAGCGGUUCucGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 147145 0.67 0.895294
Target:  5'- aGACgGCCCCGggGCCGcgAGGGCcaGCuGGa -3'
miRNA:   3'- gCUGgUGGGGUagCGGU--UCUCG--UG-CC- -5'
10849 5' -57.1 NC_002794.1 + 146335 0.67 0.895294
Target:  5'- gGAUUcgACCCCGUCGUCGAucGCgGCGGc -3'
miRNA:   3'- gCUGG--UGGGGUAGCGGUUcuCG-UGCC- -5'
10849 5' -57.1 NC_002794.1 + 146179 0.7 0.741848
Target:  5'- gGAgCGCUUCGagGCCGAG-GCGCGGg -3'
miRNA:   3'- gCUgGUGGGGUagCGGUUCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 145666 0.66 0.912797
Target:  5'- cCGAUCuCCCCAUCGCgAcgucgguAGAGguCGa -3'
miRNA:   3'- -GCUGGuGGGGUAGCGgU-------UCUCguGCc -5'
10849 5' -57.1 NC_002794.1 + 145525 0.67 0.868216
Target:  5'- aGGCCGgCCCGagCGCCucGGGCGCc- -3'
miRNA:   3'- gCUGGUgGGGUa-GCGGuuCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 141997 0.71 0.692951
Target:  5'- cCGACCGCCCCAcguuguucaagUUGCCG-GAGgugcuucgccuguCGCGGg -3'
miRNA:   3'- -GCUGGUGGGGU-----------AGCGGUuCUC-------------GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 141574 0.7 0.729561
Target:  5'- gCGGCCuccgugaucaugacGCCCgCGUCGCCGGGcGGCuCGGc -3'
miRNA:   3'- -GCUGG--------------UGGG-GUAGCGGUUC-UCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 141416 0.7 0.72861
Target:  5'- aCGAUgACCUCGggggcggcgggggCGCCGGGGGCGcCGGg -3'
miRNA:   3'- -GCUGgUGGGGUa------------GCGGUUCUCGU-GCC- -5'
10849 5' -57.1 NC_002794.1 + 141128 0.66 0.934368
Target:  5'- -cGCCACCCggcuccgaGUCGCCGA-AGCcgGCGGa -3'
miRNA:   3'- gcUGGUGGGg-------UAGCGGUUcUCG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 140739 0.67 0.868216
Target:  5'- gCGuCCGCgCCA-CGCCGAGAagcuGCACGc -3'
miRNA:   3'- -GCuGGUGgGGUaGCGGUUCU----CGUGCc -5'
10849 5' -57.1 NC_002794.1 + 140527 0.69 0.804954
Target:  5'- gCGGCagGCCCUcgggcaacaaAUCGCCGAGGGaCGCGa -3'
miRNA:   3'- -GCUGg-UGGGG----------UAGCGGUUCUC-GUGCc -5'
10849 5' -57.1 NC_002794.1 + 140024 0.68 0.829967
Target:  5'- aGGCCgcgGCCCCcgcgggCGgCGGGAGaCACGGa -3'
miRNA:   3'- gCUGG---UGGGGua----GCgGUUCUC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 138562 0.66 0.907562
Target:  5'- cCGcCCGCUCCGUCGUCGcucgaucgaGGcgcgucGGCGCGGc -3'
miRNA:   3'- -GCuGGUGGGGUAGCGGU---------UC------UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 137562 0.73 0.5758
Target:  5'- aCGuCgCGCCgCCGUCGCCGccggggccGGAGUGCGGg -3'
miRNA:   3'- -GCuG-GUGG-GGUAGCGGU--------UCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 137155 0.76 0.439668
Target:  5'- cCGGCCGCCCuCGgucccggccgcucgcUCGCCcgccccacAGAGCACGGa -3'
miRNA:   3'- -GCUGGUGGG-GU---------------AGCGGu-------UCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 137059 0.66 0.929453
Target:  5'- gGAUCugCCCGUCGgCGGGcucuucGCGCGc -3'
miRNA:   3'- gCUGGugGGGUAGCgGUUCu-----CGUGCc -5'
10849 5' -57.1 NC_002794.1 + 135534 0.68 0.837978
Target:  5'- -cGCCGCUCgGUCGCCGaccgaccgaauaGGGGCGCaGGc -3'
miRNA:   3'- gcUGGUGGGgUAGCGGU------------UCUCGUG-CC- -5'
10849 5' -57.1 NC_002794.1 + 134697 0.66 0.929453
Target:  5'- uCGACCGCCUCuggggGCC-GGAGuUGCGGg -3'
miRNA:   3'- -GCUGGUGGGGuag--CGGuUCUC-GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 134114 0.66 0.907562
Target:  5'- gGACCcCCuCCGUCcgacgGCgCGGcGAGCGCGGa -3'
miRNA:   3'- gCUGGuGG-GGUAG-----CG-GUU-CUCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.