miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10849 5' -57.1 NC_002794.1 + 83014 0.66 0.934368
Target:  5'- cCGAUCugcGCCCCGUcccggCGCCGGGcGGCACc- -3'
miRNA:   3'- -GCUGG---UGGGGUA-----GCGGUUC-UCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 285 0.66 0.934368
Target:  5'- aCGGCgGCCCUGgcgCGCCGAacGC-CGGg -3'
miRNA:   3'- -GCUGgUGGGGUa--GCGGUUcuCGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 190482 0.66 0.934368
Target:  5'- aCGGgUGCCCCA-CGCCGcccaGGAGauacCACGGc -3'
miRNA:   3'- -GCUgGUGGGGUaGCGGU----UCUC----GUGCC- -5'
10849 5' -57.1 NC_002794.1 + 182125 0.66 0.934368
Target:  5'- -cGCCAgCCgAaccgCGCCAAGucgucGCACGGg -3'
miRNA:   3'- gcUGGUgGGgUa---GCGGUUCu----CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 141128 0.66 0.934368
Target:  5'- -cGCCACCCggcuccgaGUCGCCGA-AGCcgGCGGa -3'
miRNA:   3'- gcUGGUGGGg-------UAGCGGUUcUCG--UGCC- -5'
10849 5' -57.1 NC_002794.1 + 90161 0.66 0.927934
Target:  5'- gGuCCGgguCCCCGUgaagccuccgaggaCGCgCGGGGGCACGGu -3'
miRNA:   3'- gCuGGU---GGGGUA--------------GCG-GUUCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 82789 0.66 0.928949
Target:  5'- cCGACCGCCgcguccacgcgcgCCGcgacccgcggcUCGCuCGAGAgacGCACGGc -3'
miRNA:   3'- -GCUGGUGG-------------GGU-----------AGCG-GUUCU---CGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 37251 0.66 0.918952
Target:  5'- uCGACgCucucgcuCUCCGUCGgCGGGcGCGCGGg -3'
miRNA:   3'- -GCUG-Gu------GGGGUAGCgGUUCuCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 26655 0.66 0.918952
Target:  5'- gCGGCCGgCUCGUCGgCGggguGGAGCGCc- -3'
miRNA:   3'- -GCUGGUgGGGUAGCgGU----UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 114862 0.66 0.918952
Target:  5'- -cGCCGCUCCAgCGCCucGAGCAg-- -3'
miRNA:   3'- gcUGGUGGGGUaGCGGuuCUCGUgcc -5'
10849 5' -57.1 NC_002794.1 + 56516 0.66 0.923787
Target:  5'- gCGGgCGCUCCggcgcucguuccgGUCGCCAuccGGAGCGCu- -3'
miRNA:   3'- -GCUgGUGGGG-------------UAGCGGU---UCUCGUGcc -5'
10849 5' -57.1 NC_002794.1 + 68340 0.66 0.924314
Target:  5'- uGACCgGgUUCAUcCGCCAAGAG-ACGGg -3'
miRNA:   3'- gCUGG-UgGGGUA-GCGGUUCUCgUGCC- -5'
10849 5' -57.1 NC_002794.1 + 120166 0.66 0.924314
Target:  5'- gGACCucgagauCCUCcgCGCCGccaagcgguucaAGGGCACGa -3'
miRNA:   3'- gCUGGu------GGGGuaGCGGU------------UCUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 181876 0.66 0.924314
Target:  5'- -cGCUGCCCCgggGUCGCgaaCAGGcgacAGCGCGGg -3'
miRNA:   3'- gcUGGUGGGG---UAGCG---GUUC----UCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 41675 0.66 0.924314
Target:  5'- gGGCCGCCgCAggagCGCCcGGAccGC-CGGa -3'
miRNA:   3'- gCUGGUGGgGUa---GCGGuUCU--CGuGCC- -5'
10849 5' -57.1 NC_002794.1 + 79116 0.66 0.924314
Target:  5'- aCGGCCGuCUUCuUCGCCAccGAGUACGa -3'
miRNA:   3'- -GCUGGU-GGGGuAGCGGUu-CUCGUGCc -5'
10849 5' -57.1 NC_002794.1 + 112180 0.66 0.926396
Target:  5'- gCGGCCAgCagguugucgagguaCGUCuGCCcguGGAGCACGGc -3'
miRNA:   3'- -GCUGGUgGg-------------GUAG-CGGu--UCUCGUGCC- -5'
10849 5' -57.1 NC_002794.1 + 53197 0.66 0.924314
Target:  5'- cCGAgCCACCCggacucguCGUCGUCGAGcGGCgaaACGGu -3'
miRNA:   3'- -GCU-GGUGGG--------GUAGCGGUUC-UCG---UGCC- -5'
10849 5' -57.1 NC_002794.1 + 69076 0.66 0.927934
Target:  5'- cCGGCCGCCCUccuccGUCcucaCCGAGAGUcgacaucgcgugacACGGc -3'
miRNA:   3'- -GCUGGUGGGG-----UAGc---GGUUCUCG--------------UGCC- -5'
10849 5' -57.1 NC_002794.1 + 103847 0.66 0.928949
Target:  5'- uGACCACCgagcgggCCGcCGCCGacgAGAGCgACGa -3'
miRNA:   3'- gCUGGUGG-------GGUaGCGGU---UCUCG-UGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.