miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10850 3' -64.3 NC_002794.1 + 176961 0.66 0.644587
Target:  5'- gCAGCGGGaCCUccGGGuaUCCCGGGaguaccagCGGg -3'
miRNA:   3'- -GUCGCCC-GGGu-CCC--AGGGCUCga------GCC- -5'
10850 3' -64.3 NC_002794.1 + 68837 0.66 0.644587
Target:  5'- -cGcCGGcGCUCGcGGUCCCcgacgaccccgGAGCUCGGg -3'
miRNA:   3'- guC-GCC-CGGGUcCCAGGG-----------CUCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 152608 0.66 0.644587
Target:  5'- -cGCGGGCCCAagcGGcgcaaacgcucGUCCUGGGCggcguucgagCGGc -3'
miRNA:   3'- guCGCCCGGGU---CC-----------CAGGGCUCGa---------GCC- -5'
10850 3' -64.3 NC_002794.1 + 137151 0.66 0.625646
Target:  5'- cCGGcCGGccGCCCucGGUCCCGGccGCUCGc -3'
miRNA:   3'- -GUC-GCC--CGGGucCCAGGGCU--CGAGCc -5'
10850 3' -64.3 NC_002794.1 + 153044 0.66 0.625646
Target:  5'- -cGCGGGUCCcucGGGcggacggucCCCGAGCgacggUCGGa -3'
miRNA:   3'- guCGCCCGGGu--CCCa--------GGGCUCG-----AGCC- -5'
10850 3' -64.3 NC_002794.1 + 44369 0.66 0.616179
Target:  5'- gCGGCGGGCgCGacGUCCgCGAcGCUCGa -3'
miRNA:   3'- -GUCGCCCGgGUccCAGG-GCU-CGAGCc -5'
10850 3' -64.3 NC_002794.1 + 163881 0.66 0.616179
Target:  5'- -uGCuuGGCCCuGGGUCaaaCGAGUUCGu -3'
miRNA:   3'- guCGc-CCGGGuCCCAGg--GCUCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 55322 0.66 0.605778
Target:  5'- -cGCGGGCggcuuccgaggacCCGGGGUcgcgCCCGAGg-CGGc -3'
miRNA:   3'- guCGCCCG-------------GGUCCCA----GGGCUCgaGCC- -5'
10850 3' -64.3 NC_002794.1 + 104431 0.66 0.597282
Target:  5'- -cGCcGGCCCGgacgccgccgcGGGcggCCCGAGCcCGGg -3'
miRNA:   3'- guCGcCCGGGU-----------CCCa--GGGCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 85025 0.66 0.594454
Target:  5'- --cCGGGCCCAcgcucgggugccucGGG-CCCGcGCUCGa -3'
miRNA:   3'- gucGCCCGGGU--------------CCCaGGGCuCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 90478 0.67 0.578473
Target:  5'- gCGGCGGGgCCGccGUCCCGcGCgaUCGGc -3'
miRNA:   3'- -GUCGCCCgGGUccCAGGGCuCG--AGCC- -5'
10850 3' -64.3 NC_002794.1 + 30059 0.67 0.578473
Target:  5'- --cCGGGCCCgcGGGGUCCgGucGCcCGGu -3'
miRNA:   3'- gucGCCCGGG--UCCCAGGgCu-CGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 94280 0.67 0.578473
Target:  5'- gCGGCGcGGCCCgagcGGGGgg-CG-GCUCGGg -3'
miRNA:   3'- -GUCGC-CCGGG----UCCCaggGCuCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 132144 0.67 0.569115
Target:  5'- -cGCuGGGCCCGGGGa-UCGGGgaCGGu -3'
miRNA:   3'- guCG-CCCGGGUCCCagGGCUCgaGCC- -5'
10850 3' -64.3 NC_002794.1 + 49160 0.67 0.569115
Target:  5'- cCAGCGGGCcguCCGGGaGg-CCGAGCccaCGGc -3'
miRNA:   3'- -GUCGCCCG---GGUCC-CagGGCUCGa--GCC- -5'
10850 3' -64.3 NC_002794.1 + 5052 0.67 0.568181
Target:  5'- aGGUgGGGCCUuugacucaccgacAGGG-CCCGAGCgagacCGGa -3'
miRNA:   3'- gUCG-CCCGGG-------------UCCCaGGGCUCGa----GCC- -5'
10850 3' -64.3 NC_002794.1 + 186019 0.67 0.559795
Target:  5'- --cCGGGCCCGGGcccggaCCCGGGCccCGGc -3'
miRNA:   3'- gucGCCCGGGUCCca----GGGCUCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 14725 0.67 0.559795
Target:  5'- gCGGCuucGGCUCGGGGUCCgGcGCgucaUCGGa -3'
miRNA:   3'- -GUCGc--CCGGGUCCCAGGgCuCG----AGCC- -5'
10850 3' -64.3 NC_002794.1 + 3833 0.67 0.559795
Target:  5'- aGGCGGaGCCUAGGcGgggCuuGAGCccCGGa -3'
miRNA:   3'- gUCGCC-CGGGUCC-Ca--GggCUCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 126379 0.67 0.559795
Target:  5'- -cGUGGGCgCCGGGG-CCUGcGCggCGGc -3'
miRNA:   3'- guCGCCCG-GGUCCCaGGGCuCGa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.