miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10850 3' -64.3 NC_002794.1 + 41303 0.7 0.403217
Target:  5'- -cGCGGGCCgCguGGGGUCuCCGAGgUCu- -3'
miRNA:   3'- guCGCCCGG-G--UCCCAG-GGCUCgAGcc -5'
10850 3' -64.3 NC_002794.1 + 96765 0.7 0.410395
Target:  5'- cCGGCGGucgagucGCCCGGGGUCCUccuGGaCUUGGu -3'
miRNA:   3'- -GUCGCC-------CGGGUCCCAGGGc--UC-GAGCC- -5'
10850 3' -64.3 NC_002794.1 + 146560 0.71 0.335975
Target:  5'- uCGGCGGGCCCGa-GUUCCGAGUccgccgCGGa -3'
miRNA:   3'- -GUCGCCCGGGUccCAGGGCUCGa-----GCC- -5'
10850 3' -64.3 NC_002794.1 + 115834 0.71 0.343028
Target:  5'- uCGGCgGGGCCCGGcGGgCUCGGGCcUGGg -3'
miRNA:   3'- -GUCG-CCCGGGUC-CCaGGGCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 99259 0.71 0.350187
Target:  5'- gCGGagGGGCUCGGGGgcuccggcgcgcUCCCGGGCUCu- -3'
miRNA:   3'- -GUCg-CCCGGGUCCC------------AGGGCUCGAGcc -5'
10850 3' -64.3 NC_002794.1 + 43665 0.71 0.350187
Target:  5'- gAGcCGGGCUCucGGG-CCCGGGCgCGGa -3'
miRNA:   3'- gUC-GCCCGGGu-CCCaGGGCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 70290 0.71 0.364821
Target:  5'- gAGCaGGCCgGGGGggCCCGGGCgCGa -3'
miRNA:   3'- gUCGcCCGGgUCCCa-GGGCUCGaGCc -5'
10850 3' -64.3 NC_002794.1 + 63995 0.71 0.364821
Target:  5'- aAGCGGGCUCcgucuGGGUCCUGcGGCuggcgaugUCGGa -3'
miRNA:   3'- gUCGCCCGGGu----CCCAGGGC-UCG--------AGCC- -5'
10850 3' -64.3 NC_002794.1 + 92318 0.72 0.28959
Target:  5'- -cGCGGGCggCGGGGgCCCGGGCgggCGGc -3'
miRNA:   3'- guCGCCCGg-GUCCCaGGGCUCGa--GCC- -5'
10850 3' -64.3 NC_002794.1 + 105285 0.74 0.212142
Target:  5'- cCAGCGuuGCUCGGGGUCCCG-GCUCa- -3'
miRNA:   3'- -GUCGCc-CGGGUCCCAGGGCuCGAGcc -5'
10850 3' -64.3 NC_002794.1 + 178799 0.74 0.217026
Target:  5'- aGGCGgcucGGCCCGGGGggaCCGGGCacUCGGg -3'
miRNA:   3'- gUCGC----CCGGGUCCCag-GGCUCG--AGCC- -5'
10850 3' -64.3 NC_002794.1 + 12786 0.75 0.196691
Target:  5'- uCGGCGagaacgugacgaucGGCCCGGGG-CCCGuGCUCGa -3'
miRNA:   3'- -GUCGC--------------CCGGGUCCCaGGGCuCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 14918 0.75 0.202657
Target:  5'- gAGCGGGCUCGcGGUCCCGAcguGCUCu- -3'
miRNA:   3'- gUCGCCCGGGUcCCAGGGCU---CGAGcc -5'
10850 3' -64.3 NC_002794.1 + 145332 0.76 0.172314
Target:  5'- gCGGCgcucGGGCCCGagcGGG-CCCGAGCUgGGg -3'
miRNA:   3'- -GUCG----CCCGGGU---CCCaGGGCUCGAgCC- -5'
10850 3' -64.3 NC_002794.1 + 45462 1.08 0.000965
Target:  5'- uCAGCGGGCCCAGGGUCCCGAGCUCGGc -3'
miRNA:   3'- -GUCGCCCGGGUCCCAGGGCUCGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.