miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10850 3' -64.3 NC_002794.1 + 4101 0.67 0.547743
Target:  5'- uGGCGGGCCCAGGaccccccaccccccGuucguUCCCGGGgUCu- -3'
miRNA:   3'- gUCGCCCGGGUCC--------------C-----AGGGCUCgAGcc -5'
10850 3' -64.3 NC_002794.1 + 101009 0.67 0.541288
Target:  5'- -cGCGGGCCUuccugucgGGGGaCgCGGGC-CGGg -3'
miRNA:   3'- guCGCCCGGG--------UCCCaGgGCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 111096 0.67 0.541288
Target:  5'- uCGGCGGGCCCGGcGGgaCCGuGGCcgUCGa -3'
miRNA:   3'- -GUCGCCCGGGUC-CCagGGC-UCG--AGCc -5'
10850 3' -64.3 NC_002794.1 + 35971 0.67 0.535775
Target:  5'- cCGGaCGGGCCCGcucGcGGaCCCGguuuuauugucgcggGGCUCGGg -3'
miRNA:   3'- -GUC-GCCCGGGU---C-CCaGGGC---------------UCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 112259 0.67 0.532111
Target:  5'- cCGGCGGGaCCGGcGUCUCGucCUCGGc -3'
miRNA:   3'- -GUCGCCCgGGUCcCAGGGCucGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 151603 0.67 0.532111
Target:  5'- -cGCGGGCCCGcGGUUCCucGGCUgaCGGc -3'
miRNA:   3'- guCGCCCGGGUcCCAGGGc-UCGA--GCC- -5'
10850 3' -64.3 NC_002794.1 + 67962 0.68 0.52299
Target:  5'- aCGGCGGGCCCAgacGGGUCggUCGcuuCUCGa -3'
miRNA:   3'- -GUCGCCCGGGU---CCCAG--GGCuc-GAGCc -5'
10850 3' -64.3 NC_002794.1 + 126444 0.68 0.504935
Target:  5'- gGGCGccucGGCCCuGGGUCC--GGCUCGu -3'
miRNA:   3'- gUCGC----CCGGGuCCCAGGgcUCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 115870 0.68 0.496009
Target:  5'- gAG-GGGUCCGGGGcgUCCgGGGCguccgCGGa -3'
miRNA:   3'- gUCgCCCGGGUCCC--AGGgCUCGa----GCC- -5'
10850 3' -64.3 NC_002794.1 + 84158 0.68 0.487155
Target:  5'- aCGGCGccuccucucGGCCCAGcgcucGG-CCCGGcGCUCGGc -3'
miRNA:   3'- -GUCGC---------CCGGGUC-----CCaGGGCU-CGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 178263 0.69 0.469675
Target:  5'- aAGCGGGCUgaccggagaCGGGGUCggUCGAGCgaCGGc -3'
miRNA:   3'- gUCGCCCGG---------GUCCCAG--GGCUCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 184487 0.69 0.469675
Target:  5'- -cGCgGGGCCCcGGacgCCCGGGCggcgCGGg -3'
miRNA:   3'- guCG-CCCGGGuCCca-GGGCUCGa---GCC- -5'
10850 3' -64.3 NC_002794.1 + 87352 0.69 0.452521
Target:  5'- gCAGCGGGUCCGgcggcgagcGGcGUUCUGGGCggcgCGGc -3'
miRNA:   3'- -GUCGCCCGGGU---------CC-CAGGGCUCGa---GCC- -5'
10850 3' -64.3 NC_002794.1 + 145626 0.69 0.435715
Target:  5'- gAGCucGGCCCGGagaucGGaCCCGAGCUCGu -3'
miRNA:   3'- gUCGc-CCGGGUC-----CCaGGGCUCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 188368 0.69 0.427448
Target:  5'- cCGGCGgcGGCCgAGGGcguucUCCCGGGCUucucgccgcagaCGGg -3'
miRNA:   3'- -GUCGC--CCGGgUCCC-----AGGGCUCGA------------GCC- -5'
10850 3' -64.3 NC_002794.1 + 90574 0.69 0.426627
Target:  5'- gCGGCGGGuCCCGGGcgcuccaGUCCCGucgGGcCUCGa -3'
miRNA:   3'- -GUCGCCC-GGGUCC-------CAGGGC---UC-GAGCc -5'
10850 3' -64.3 NC_002794.1 + 32594 0.69 0.419275
Target:  5'- gGGcCGGGgCCGGGG-CCgGGGC-CGGg -3'
miRNA:   3'- gUC-GCCCgGGUCCCaGGgCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 159583 0.69 0.419275
Target:  5'- uGGCGGGC--GGGGUCCaccaGGGUUCGa -3'
miRNA:   3'- gUCGCCCGggUCCCAGGg---CUCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 96765 0.7 0.410395
Target:  5'- cCGGCGGucgagucGCCCGGGGUCCUccuGGaCUUGGu -3'
miRNA:   3'- -GUCGCC-------CGGGUCCCAGGGc--UC-GAGCC- -5'
10850 3' -64.3 NC_002794.1 + 41303 0.7 0.403217
Target:  5'- -cGCGGGCCgCguGGGGUCuCCGAGgUCu- -3'
miRNA:   3'- guCGCCCGG-G--UCCCAG-GGCUCgAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.