miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10850 3' -64.3 NC_002794.1 + 3833 0.67 0.559795
Target:  5'- aGGCGGaGCCUAGGcGgggCuuGAGCccCGGa -3'
miRNA:   3'- gUCGCC-CGGGUCC-Ca--GggCUCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 4101 0.67 0.547743
Target:  5'- uGGCGGGCCCAGGaccccccaccccccGuucguUCCCGGGgUCu- -3'
miRNA:   3'- gUCGCCCGGGUCC--------------C-----AGGGCUCgAGcc -5'
10850 3' -64.3 NC_002794.1 + 5052 0.67 0.568181
Target:  5'- aGGUgGGGCCUuugacucaccgacAGGG-CCCGAGCgagacCGGa -3'
miRNA:   3'- gUCG-CCCGGG-------------UCCCaGGGCUCGa----GCC- -5'
10850 3' -64.3 NC_002794.1 + 12786 0.75 0.196691
Target:  5'- uCGGCGagaacgugacgaucGGCCCGGGG-CCCGuGCUCGa -3'
miRNA:   3'- -GUCGC--------------CCGGGUCCCaGGGCuCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 14725 0.67 0.559795
Target:  5'- gCGGCuucGGCUCGGGGUCCgGcGCgucaUCGGa -3'
miRNA:   3'- -GUCGc--CCGGGUCCCAGGgCuCG----AGCC- -5'
10850 3' -64.3 NC_002794.1 + 14918 0.75 0.202657
Target:  5'- gAGCGGGCUCGcGGUCCCGAcguGCUCu- -3'
miRNA:   3'- gUCGCCCGGGUcCCAGGGCU---CGAGcc -5'
10850 3' -64.3 NC_002794.1 + 30059 0.67 0.578473
Target:  5'- --cCGGGCCCgcGGGGUCCgGucGCcCGGu -3'
miRNA:   3'- gucGCCCGGG--UCCCAGGgCu-CGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 32594 0.69 0.419275
Target:  5'- gGGcCGGGgCCGGGG-CCgGGGC-CGGg -3'
miRNA:   3'- gUC-GCCCgGGUCCCaGGgCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 35971 0.67 0.535775
Target:  5'- cCGGaCGGGCCCGcucGcGGaCCCGguuuuauugucgcggGGCUCGGg -3'
miRNA:   3'- -GUC-GCCCGGGU---C-CCaGGGC---------------UCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 41303 0.7 0.403217
Target:  5'- -cGCGGGCCgCguGGGGUCuCCGAGgUCu- -3'
miRNA:   3'- guCGCCCGG-G--UCCCAG-GGCUCgAGcc -5'
10850 3' -64.3 NC_002794.1 + 43665 0.71 0.350187
Target:  5'- gAGcCGGGCUCucGGG-CCCGGGCgCGGa -3'
miRNA:   3'- gUC-GCCCGGGu-CCCaGGGCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 44369 0.66 0.616179
Target:  5'- gCGGCGGGCgCGacGUCCgCGAcGCUCGa -3'
miRNA:   3'- -GUCGCCCGgGUccCAGG-GCU-CGAGCc -5'
10850 3' -64.3 NC_002794.1 + 45462 1.08 0.000965
Target:  5'- uCAGCGGGCCCAGGGUCCCGAGCUCGGc -3'
miRNA:   3'- -GUCGCCCGGGUCCCAGGGCUCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 49160 0.67 0.569115
Target:  5'- cCAGCGGGCcguCCGGGaGg-CCGAGCccaCGGc -3'
miRNA:   3'- -GUCGCCCG---GGUCC-CagGGCUCGa--GCC- -5'
10850 3' -64.3 NC_002794.1 + 55322 0.66 0.605778
Target:  5'- -cGCGGGCggcuuccgaggacCCGGGGUcgcgCCCGAGg-CGGc -3'
miRNA:   3'- guCGCCCG-------------GGUCCCA----GGGCUCgaGCC- -5'
10850 3' -64.3 NC_002794.1 + 63995 0.71 0.364821
Target:  5'- aAGCGGGCUCcgucuGGGUCCUGcGGCuggcgaugUCGGa -3'
miRNA:   3'- gUCGCCCGGGu----CCCAGGGC-UCG--------AGCC- -5'
10850 3' -64.3 NC_002794.1 + 67962 0.68 0.52299
Target:  5'- aCGGCGGGCCCAgacGGGUCggUCGcuuCUCGa -3'
miRNA:   3'- -GUCGCCCGGGU---CCCAG--GGCuc-GAGCc -5'
10850 3' -64.3 NC_002794.1 + 68837 0.66 0.644587
Target:  5'- -cGcCGGcGCUCGcGGUCCCcgacgaccccgGAGCUCGGg -3'
miRNA:   3'- guC-GCC-CGGGUcCCAGGG-----------CUCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 70290 0.71 0.364821
Target:  5'- gAGCaGGCCgGGGGggCCCGGGCgCGa -3'
miRNA:   3'- gUCGcCCGGgUCCCa-GGGCUCGaGCc -5'
10850 3' -64.3 NC_002794.1 + 84158 0.68 0.487155
Target:  5'- aCGGCGccuccucucGGCCCAGcgcucGG-CCCGGcGCUCGGc -3'
miRNA:   3'- -GUCGC---------CCGGGUC-----CCaGGGCU-CGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.