miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10850 3' -64.3 NC_002794.1 + 85025 0.66 0.594454
Target:  5'- --cCGGGCCCAcgcucgggugccucGGG-CCCGcGCUCGa -3'
miRNA:   3'- gucGCCCGGGU--------------CCCaGGGCuCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 87352 0.69 0.452521
Target:  5'- gCAGCGGGUCCGgcggcgagcGGcGUUCUGGGCggcgCGGc -3'
miRNA:   3'- -GUCGCCCGGGU---------CC-CAGGGCUCGa---GCC- -5'
10850 3' -64.3 NC_002794.1 + 90478 0.67 0.578473
Target:  5'- gCGGCGGGgCCGccGUCCCGcGCgaUCGGc -3'
miRNA:   3'- -GUCGCCCgGGUccCAGGGCuCG--AGCC- -5'
10850 3' -64.3 NC_002794.1 + 90574 0.69 0.426627
Target:  5'- gCGGCGGGuCCCGGGcgcuccaGUCCCGucgGGcCUCGa -3'
miRNA:   3'- -GUCGCCC-GGGUCC-------CAGGGC---UC-GAGCc -5'
10850 3' -64.3 NC_002794.1 + 92318 0.72 0.28959
Target:  5'- -cGCGGGCggCGGGGgCCCGGGCgggCGGc -3'
miRNA:   3'- guCGCCCGg-GUCCCaGGGCUCGa--GCC- -5'
10850 3' -64.3 NC_002794.1 + 94013 0.7 0.39299
Target:  5'- gCGGCGGGCCgGcGGGUUCCgccggcgggcccgaGAGCggCGGc -3'
miRNA:   3'- -GUCGCCCGGgU-CCCAGGG--------------CUCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 94280 0.67 0.578473
Target:  5'- gCGGCGcGGCCCgagcGGGGgg-CG-GCUCGGg -3'
miRNA:   3'- -GUCGC-CCGGG----UCCCaggGCuCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 96765 0.7 0.410395
Target:  5'- cCGGCGGucgagucGCCCGGGGUCCUccuGGaCUUGGu -3'
miRNA:   3'- -GUCGCC-------CGGGUCCCAGGGc--UC-GAGCC- -5'
10850 3' -64.3 NC_002794.1 + 99259 0.71 0.350187
Target:  5'- gCGGagGGGCUCGGGGgcuccggcgcgcUCCCGGGCUCu- -3'
miRNA:   3'- -GUCg-CCCGGGUCCC------------AGGGCUCGAGcc -5'
10850 3' -64.3 NC_002794.1 + 101009 0.67 0.541288
Target:  5'- -cGCGGGCCUuccugucgGGGGaCgCGGGC-CGGg -3'
miRNA:   3'- guCGCCCGGG--------UCCCaGgGCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 104431 0.66 0.597282
Target:  5'- -cGCcGGCCCGgacgccgccgcGGGcggCCCGAGCcCGGg -3'
miRNA:   3'- guCGcCCGGGU-----------CCCa--GGGCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 105285 0.74 0.212142
Target:  5'- cCAGCGuuGCUCGGGGUCCCG-GCUCa- -3'
miRNA:   3'- -GUCGCc-CGGGUCCCAGGGCuCGAGcc -5'
10850 3' -64.3 NC_002794.1 + 111096 0.67 0.541288
Target:  5'- uCGGCGGGCCCGGcGGgaCCGuGGCcgUCGa -3'
miRNA:   3'- -GUCGCCCGGGUC-CCagGGC-UCG--AGCc -5'
10850 3' -64.3 NC_002794.1 + 112259 0.67 0.532111
Target:  5'- cCGGCGGGaCCGGcGUCUCGucCUCGGc -3'
miRNA:   3'- -GUCGCCCgGGUCcCAGGGCucGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 115834 0.71 0.343028
Target:  5'- uCGGCgGGGCCCGGcGGgCUCGGGCcUGGg -3'
miRNA:   3'- -GUCG-CCCGGGUC-CCaGGGCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 115870 0.68 0.496009
Target:  5'- gAG-GGGUCCGGGGcgUCCgGGGCguccgCGGa -3'
miRNA:   3'- gUCgCCCGGGUCCC--AGGgCUCGa----GCC- -5'
10850 3' -64.3 NC_002794.1 + 118745 0.7 0.395335
Target:  5'- uCGGCGcgcucaGGCCCAGGuga-CGAGCUCGGc -3'
miRNA:   3'- -GUCGC------CCGGGUCCcaggGCUCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 126379 0.67 0.559795
Target:  5'- -cGUGGGCgCCGGGG-CCUGcGCggCGGc -3'
miRNA:   3'- guCGCCCG-GGUCCCaGGGCuCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 126444 0.68 0.504935
Target:  5'- gGGCGccucGGCCCuGGGUCC--GGCUCGu -3'
miRNA:   3'- gUCGC----CCGGGuCCCAGGgcUCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 132144 0.67 0.569115
Target:  5'- -cGCuGGGCCCGGGGa-UCGGGgaCGGu -3'
miRNA:   3'- guCG-CCCGGGUCCCagGGCUCgaGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.