miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10850 3' -64.3 NC_002794.1 + 188368 0.69 0.427448
Target:  5'- cCGGCGgcGGCCgAGGGcguucUCCCGGGCUucucgccgcagaCGGg -3'
miRNA:   3'- -GUCGC--CCGGgUCCC-----AGGGCUCGA------------GCC- -5'
10850 3' -64.3 NC_002794.1 + 186019 0.67 0.559795
Target:  5'- --cCGGGCCCGGGcccggaCCCGGGCccCGGc -3'
miRNA:   3'- gucGCCCGGGUCCca----GGGCUCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 184487 0.69 0.469675
Target:  5'- -cGCgGGGCCCcGGacgCCCGGGCggcgCGGg -3'
miRNA:   3'- guCG-CCCGGGuCCca-GGGCUCGa---GCC- -5'
10850 3' -64.3 NC_002794.1 + 178799 0.74 0.217026
Target:  5'- aGGCGgcucGGCCCGGGGggaCCGGGCacUCGGg -3'
miRNA:   3'- gUCGC----CCGGGUCCCag-GGCUCG--AGCC- -5'
10850 3' -64.3 NC_002794.1 + 178263 0.69 0.469675
Target:  5'- aAGCGGGCUgaccggagaCGGGGUCggUCGAGCgaCGGc -3'
miRNA:   3'- gUCGCCCGG---------GUCCCAG--GGCUCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 176961 0.66 0.644587
Target:  5'- gCAGCGGGaCCUccGGGuaUCCCGGGaguaccagCGGg -3'
miRNA:   3'- -GUCGCCC-GGGu-CCC--AGGGCUCga------GCC- -5'
10850 3' -64.3 NC_002794.1 + 163881 0.66 0.616179
Target:  5'- -uGCuuGGCCCuGGGUCaaaCGAGUUCGu -3'
miRNA:   3'- guCGc-CCGGGuCCCAGg--GCUCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 159583 0.69 0.419275
Target:  5'- uGGCGGGC--GGGGUCCaccaGGGUUCGa -3'
miRNA:   3'- gUCGCCCGggUCCCAGGg---CUCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 153044 0.66 0.625646
Target:  5'- -cGCGGGUCCcucGGGcggacggucCCCGAGCgacggUCGGa -3'
miRNA:   3'- guCGCCCGGGu--CCCa--------GGGCUCG-----AGCC- -5'
10850 3' -64.3 NC_002794.1 + 152608 0.66 0.644587
Target:  5'- -cGCGGGCCCAagcGGcgcaaacgcucGUCCUGGGCggcguucgagCGGc -3'
miRNA:   3'- guCGCCCGGGU---CC-----------CAGGGCUCGa---------GCC- -5'
10850 3' -64.3 NC_002794.1 + 151603 0.67 0.532111
Target:  5'- -cGCGGGCCCGcGGUUCCucGGCUgaCGGc -3'
miRNA:   3'- guCGCCCGGGUcCCAGGGc-UCGA--GCC- -5'
10850 3' -64.3 NC_002794.1 + 146560 0.71 0.335975
Target:  5'- uCGGCGGGCCCGa-GUUCCGAGUccgccgCGGa -3'
miRNA:   3'- -GUCGCCCGGGUccCAGGGCUCGa-----GCC- -5'
10850 3' -64.3 NC_002794.1 + 145626 0.69 0.435715
Target:  5'- gAGCucGGCCCGGagaucGGaCCCGAGCUCGu -3'
miRNA:   3'- gUCGc-CCGGGUC-----CCaGGGCUCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 145332 0.76 0.172314
Target:  5'- gCGGCgcucGGGCCCGagcGGG-CCCGAGCUgGGg -3'
miRNA:   3'- -GUCG----CCCGGGU---CCCaGGGCUCGAgCC- -5'
10850 3' -64.3 NC_002794.1 + 137151 0.66 0.625646
Target:  5'- cCGGcCGGccGCCCucGGUCCCGGccGCUCGc -3'
miRNA:   3'- -GUC-GCC--CGGGucCCAGGGCU--CGAGCc -5'
10850 3' -64.3 NC_002794.1 + 132144 0.67 0.569115
Target:  5'- -cGCuGGGCCCGGGGa-UCGGGgaCGGu -3'
miRNA:   3'- guCG-CCCGGGUCCCagGGCUCgaGCC- -5'
10850 3' -64.3 NC_002794.1 + 126444 0.68 0.504935
Target:  5'- gGGCGccucGGCCCuGGGUCC--GGCUCGu -3'
miRNA:   3'- gUCGC----CCGGGuCCCAGGgcUCGAGCc -5'
10850 3' -64.3 NC_002794.1 + 126379 0.67 0.559795
Target:  5'- -cGUGGGCgCCGGGG-CCUGcGCggCGGc -3'
miRNA:   3'- guCGCCCG-GGUCCCaGGGCuCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 118745 0.7 0.395335
Target:  5'- uCGGCGcgcucaGGCCCAGGuga-CGAGCUCGGc -3'
miRNA:   3'- -GUCGC------CCGGGUCCcaggGCUCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 115870 0.68 0.496009
Target:  5'- gAG-GGGUCCGGGGcgUCCgGGGCguccgCGGa -3'
miRNA:   3'- gUCgCCCGGGUCCC--AGGgCUCGa----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.