miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10850 3' -64.3 NC_002794.1 + 30059 0.67 0.578473
Target:  5'- --cCGGGCCCgcGGGGUCCgGucGCcCGGu -3'
miRNA:   3'- gucGCCCGGG--UCCCAGGgCu-CGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 90478 0.67 0.578473
Target:  5'- gCGGCGGGgCCGccGUCCCGcGCgaUCGGc -3'
miRNA:   3'- -GUCGCCCgGGUccCAGGGCuCG--AGCC- -5'
10850 3' -64.3 NC_002794.1 + 5052 0.67 0.568181
Target:  5'- aGGUgGGGCCUuugacucaccgacAGGG-CCCGAGCgagacCGGa -3'
miRNA:   3'- gUCG-CCCGGG-------------UCCCaGGGCUCGa----GCC- -5'
10850 3' -64.3 NC_002794.1 + 35971 0.67 0.535775
Target:  5'- cCGGaCGGGCCCGcucGcGGaCCCGguuuuauugucgcggGGCUCGGg -3'
miRNA:   3'- -GUC-GCCCGGGU---C-CCaGGGC---------------UCGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 101009 0.67 0.541288
Target:  5'- -cGCGGGCCUuccugucgGGGGaCgCGGGC-CGGg -3'
miRNA:   3'- guCGCCCGGG--------UCCCaGgGCUCGaGCC- -5'
10850 3' -64.3 NC_002794.1 + 151603 0.67 0.532111
Target:  5'- -cGCGGGCCCGcGGUUCCucGGCUgaCGGc -3'
miRNA:   3'- guCGCCCGGGUcCCAGGGc-UCGA--GCC- -5'
10850 3' -64.3 NC_002794.1 + 112259 0.67 0.532111
Target:  5'- cCGGCGGGaCCGGcGUCUCGucCUCGGc -3'
miRNA:   3'- -GUCGCCCgGGUCcCAGGGCucGAGCC- -5'
10850 3' -64.3 NC_002794.1 + 4101 0.67 0.547743
Target:  5'- uGGCGGGCCCAGGaccccccaccccccGuucguUCCCGGGgUCu- -3'
miRNA:   3'- gUCGCCCGGGUCC--------------C-----AGGGCUCgAGcc -5'
10850 3' -64.3 NC_002794.1 + 111096 0.67 0.541288
Target:  5'- uCGGCGGGCCCGGcGGgaCCGuGGCcgUCGa -3'
miRNA:   3'- -GUCGCCCGGGUC-CCagGGC-UCG--AGCc -5'
10850 3' -64.3 NC_002794.1 + 126379 0.67 0.559795
Target:  5'- -cGUGGGCgCCGGGG-CCUGcGCggCGGc -3'
miRNA:   3'- guCGCCCG-GGUCCCaGGGCuCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 3833 0.67 0.559795
Target:  5'- aGGCGGaGCCUAGGcGgggCuuGAGCccCGGa -3'
miRNA:   3'- gUCGCC-CGGGUCC-Ca--GggCUCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 14725 0.67 0.559795
Target:  5'- gCGGCuucGGCUCGGGGUCCgGcGCgucaUCGGa -3'
miRNA:   3'- -GUCGc--CCGGGUCCCAGGgCuCG----AGCC- -5'
10850 3' -64.3 NC_002794.1 + 186019 0.67 0.559795
Target:  5'- --cCGGGCCCGGGcccggaCCCGGGCccCGGc -3'
miRNA:   3'- gucGCCCGGGUCCca----GGGCUCGa-GCC- -5'
10850 3' -64.3 NC_002794.1 + 49160 0.67 0.569115
Target:  5'- cCAGCGGGCcguCCGGGaGg-CCGAGCccaCGGc -3'
miRNA:   3'- -GUCGCCCG---GGUCC-CagGGCUCGa--GCC- -5'
10850 3' -64.3 NC_002794.1 + 176961 0.66 0.644587
Target:  5'- gCAGCGGGaCCUccGGGuaUCCCGGGaguaccagCGGg -3'
miRNA:   3'- -GUCGCCC-GGGu-CCC--AGGGCUCga------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.